Evidence map›Paper›PMID 31587832›Full record

ArticleBiophysical journal2019

Otoferlin C2F Domain-Induced Changes in Membrane Structure Observed by Sum Frequency Generation.

Thaddeus W Golbek, Murugesh Padmanarayana, Steven J Roeters, Tobias Weidner, Colin P Johnson, Joe E Baio

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Developments and Ongoing Challenges for Analysis of Surface-Bound Proteins.Annual review of analytical chemistry (Palo Alto, Calif.) · 2021
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Thaddeus W GolbekSchool of Chemical, Biological, and Environmental Engineering, Oregon State University, Corvallis, Oregon; Department of Chemistry, Aarhus University, Aarhus, Denmark.
Murugesh PadmanarayanaDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon.
Steven J RoetersDepartment of Chemistry, Aarhus University, Aarhus, Denmark.
Tobias WeidnerDepartment of Chemistry, Aarhus University, Aarhus, Denmark.
Colin P JohnsonDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon. Electronic address: colin.johnson@oregonstate.edu.
Joe E BaioSchool of Chemical, Biological, and Environmental Engineering, Oregon State University, Corvallis, Oregon. Electronic address: joe.baio@oregonstate.edu.
Oregon State University · USAarhus University · DK

Funding

In vivo and in vitro studies of the deafness associated protein otoferlinR01DC014588 · NIDCD · OREGON STATE UNIVERSITY · PI JOHNSON, COLIN P · 2016 to 2020
$1.7M
NIDCD NIH HHS R01 DC014588
6 · The paper itself

Abstract

Proteins that contain C2 domains are involved in a variety of biological processes, including encoding of sound, cell signaling, and cell membrane repair. Of particular importance is the interface activity of the C-terminal C2F domain of otoferlin due to the pathological mutations known to significantly disrupt the protein's lipid membrane interface binding activity, resulting in hearing loss. Therefore, there is a critical need to define the geometry and positions of functionally important sites and structures at the otoferlin-lipid membrane interface. Here, we describe the first in situ probe of the protein orientation of otoferlin's C2F domain interacting with a cell membrane surface. To identify this protein's orientation at the lipid interface, we applied sum frequency generation (SFG) vibrational spectroscopy and coupled it with simulated SFG spectra to observe and quantify the otoferlin C2F domain interacting with model lipid membranes. A model cell membrane was built with equal amounts of phosphatidylserine and phosphatidylcholine. SFG measurements of the lipids that make up the model membrane indicate a 62% increase in amplitude from the SFG signal near 2075 cm

Indexed as

Spectrum Analysis1,2-DipalmitoylphosphatidylcholineCell MembraneLiposomesMembrane ProteinsPhosphatidylserinesProtein BindingProtein DomainsVibration1,2-DipalmitoylphosphatidylcholinedipalmitoylphosphatidylserineLiposomesMembrane ProteinsPhosphatidylserines

Identifiers

PMID31587832
PMCPMC7019022
OpenAlexW2973381824

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.