Evidence map›Paper›PMID 31587639›Full record

ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2019

Targeted metagenomic recovery of four divergent viruses reveals shared and distinctive characteristics of giant viruses of marine eukaryotes.

David M Needham, Camille Poirier, Elisabeth Hehenberger, Valeria Jiménez, Jarred E Swalwell, Alyson E Santoro, Alexandra Z Worden

Open access · bronzeAbstract read
In one paragraph

Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Single cell ecology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

David M NeedhamMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA.
Camille PoirierMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA.
Elisabeth HehenbergerMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA.
Valeria JiménezMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA.
Jarred E SwalwellMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA.
Alyson E SantoroDepartment of Ecology, Evolution and Marine Biology, University of California, Santa Barbara, CA 93106, USA.
Alexandra Z WordenMonterey Bay Aquarium Research Institute, Moss Landing, CA 95039, USA.
Monterey Bay Aquarium Research Institute · USUniversity of California, Santa Barbara · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Giant viruses have remarkable genomic repertoires-blurring the line with cellular life-and act as top-down controls of eukaryotic plankton. However, to date only six cultured giant virus genomes are available from the pelagic ocean. We used at-sea flow cytometry with staining and sorting designed to target wild predatory eukaryotes, followed by DNA sequencing and assembly, to recover novel giant viruses from the Pacific Ocean. We retrieved four 'PacV' partial genomes that range from 421 to 1605 Kb, with 13 contigs on average, including the largest marine viral genomic assembly reported to date. Phylogenetic analyses indicate that three of the new viruses span a clade with deep-branching members of giant

Indexed as

Genome, ViralMetagenomeEukaryotaGiant VirusesMetagenomicsPacific OceanPhylogenyMimiviridaeuncultivated giant virusesvirus–host mutualism

Identifiers

PMID31587639
PMCPMC6792449
OpenAlexW2979274969

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.