Evidence map›Paper›PMID 31586890›Full record

ArticleThe Journal of surgical research2020

Noninvasive Detection of Colorectal Carcinomas Using Serum Protein Biomarkers.

Melanie M Ivancic, Bryant W Megna, Yuriy Sverchkov, Mark Craven, Mark Reichelderfer, Perry J Pickhardt, Michael R Sussman, Gregory D Kennedy

Open access · greenAbstract read
In one paragraph

Article in The Journal of surgical research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 50 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Biomarker Identification through Proteomics in Colorectal Cancer.International journal of molecular sciences · 2024
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Melanie M IvancicUniversity of Wisconsin-Madison Biotechnology Center, Madison, Wisconsin; Department of Oncology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin; Department of Biochemistry, University of Wisconsin, Madison, Wisconsin.
Bryant W MegnaDepartment of Oncology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin; Division of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, Wisconsin; Department of Medicine, University of Minnesota Medical School, Minneapolis, Minnesota.
Yuriy SverchkovDepartment of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin.
Mark CravenDepartment of Biostatistics and Medical Informatics, University of Wisconsin, Madison, Wisconsin.
Mark ReichelderferDivision of Gastroenterology and Hepatology, Department of Medicine, University of Wisconsin, Madison, Wisconsin.
Perry J PickhardtDepartment of Radiology, University of Wisconsin, UW Medical Foundation Madison, Wisconsin.
Michael R SussmanUniversity of Wisconsin-Madison Biotechnology Center, Madison, Wisconsin; Department of Biochemistry, University of Wisconsin, Madison, Wisconsin.
Gregory D KennedyDepartment of Surgery, University of Alabama-Birmingham, Birmingham, Alabama. Electronic address: gkennedy@uabmc.edu.
University of Wisconsin–Madison · USUniversity of Alabama at Birmingham · USUniversity of Wisconsin Foundation · US

Funding

University of Wisconsin Institute for Clinical and Translational ResearchUL1TR002373 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI ELIZABETH S BURNSIDE, Allan R. Brasier · 2017 to 2026
$75.9M
Institutional Clinical and Translational Science AwardUL1TR000427 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$32.2M
Research Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6M
BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
TrainingU54AI117924 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI CRAVEN, MARK W. · 2014 to 2018
$11.3M
Comparative Effectiveness of Virtual and Optical Colonoscopy for CRC SurveillanceR01CA155347 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI WEINBERG, DAVID S · 2011 to 2015
$3.3M
Virtual Colonoscopy and Colorectal Cancer ScreeningR01CA144835 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI PICKHARDT, PERRY, SMITH, MAUREEN A · 2010 to 2013
$2.1M
The Role of Aryl Hyrocarbon Receptor in Colon TumorigenesisR01ES020900 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI KENNEDY, GREGORY DEAN · 2013 to 2017
$1.6M
Molecular and Cellular Mechanisms of Tumor DevelopmentT32CA157322 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI ALEXANDER, CAROLINE M · 2011 to 2017
$1.6M
Ultra-Low Radiation Dose Body CT ImagingR01CA169331 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI CHEN, GUANG-HONG, PICKHARDT, PERRY · 2012 to 2016
$1.4M
NCATS NIH HHS UL1 TR000427NCATS NIH HHS UL1 TR002373NCI NIH HHS R01 CA144835NCI NIH HHS R01 CA144835-01NCI NIH HHS R01 CA155347NCI NIH HHS R01 CA16933-01NCI NIH HHS R01 CA169331NCI NIH HHS RO1 CA155347-01NCI NIH HHS T32 CA157322NCI NIH HHS T32 CA157322-03NIAID NIH HHS U54 AI117924NIEHS NIH HHS R01 ES020900NIGMS NIH HHS T32 GM008349NLM NIH HHS T15 LM007359
6 · The paper itself

Abstract

backgroundA major roadblock to reducing the mortality of colorectal cancer (CRC) is prompt detection and treatment, and a simple blood test is likely to have higher compliance than all of the current methods. The purpose of this report is to examine the utility of a mass spectrometry-based blood serum protein biomarker test for detection of CRC. MATERIALS AND

methodsBlood was drawn from individuals (n = 213) before colonoscopy or from patients with nonmetastatic CRC (n = 50) before surgery. Proteins were isolated from the serum of patients using targeted liquid chromatography-tandem mass spectrometry. We designed a machine-learning statistical model to assess these proteins.

resultsWhen considered individually, over 70% of the selected biomarkers showed significance by Mann-Whitney testing for distinguishing cancer-bearing cases from cancer-free cases. Using machine-learning methods, peptides derived from epidermal growth factor receptor and leucine-rich alpha-2-glycoprotein 1 were consistently identified as highly predictive for detecting CRC from cancer-free cases. A five-marker panel consisting of leucine-rich alpha-2-glycoprotein 1, epidermal growth factor receptor, inter-alpha-trypsin inhibitor heavy-chain family member 4, hemopexin, and superoxide dismutase 3 performed the best with 70% specificity at over 89% sensitivity (area under the curve = 0.86) in the validation set. For distinguishing regional from localized cancers, cross-validation within the training set showed that a panel of four proteins consisting of CD44 molecule, GC-vitamin D-binding protein, C-reactive protein, and inter-alpha-trypsin inhibitor heavy-chain family member 3 yielded the highest performance (area under the curve = 0.75).

conclusionsThe minimally invasive blood biomarker panels identified here could serve as screening/detection alternatives for CRC in a human population and potentially useful for staging of existing cancer.

Indexed as

AdultAgedAged, 80 and overBiomarkers, TumorColectomyColonoscopyColorectal NeoplasmsCross-Sectional StudiesEarly Detection of CancerFeasibility StudiesFemaleHumansLymphatic MetastasisMaleMass ScreeningMass SpectrometryBiomarkers, TumorBiomarkersColorectal neoplasmsProteomic

Identifiers

PMID31586890
PMCPMC6957232
OpenAlexW2977737503

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.