Evidence map›Paper›PMID 31586682›Full record

ArticleRegulatory toxicology and pharmacology : RTP2019

Transitioning to composite bacterial mutagenicity models in ICH M7 (Q)SAR analyses.

Curran Landry, Marlene T Kim, Naomi L Kruhlak, Kevin P Cross, Roustem Saiakhov, Suman Chakravarti, Lidiya Stavitskaya

Open access · hybridAbstract read
In one paragraph

Article in Regulatory toxicology and pharmacology : RTP, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  4. Mind your prevalence!Journal of cheminformatics · 2024
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  7. Implementation ofComputational toxicology (Amsterdam, Netherlands) · 2022
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  8. Review
  9. MultiCASE Platform for In Silico Toxicology.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  10. Computational toxicology (Amsterdam, Netherlands) · 2021
    Article
  11. Bacterial mutagenicity test data: collection by the task force of the Japan pharmaceutical manufacturers association.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2021
    Article
  12. In vivo and in vitro mutagenicity of perillaldehyde and cinnamaldehyde.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Screening for Ames mutagenicity of food flavor chemicals by (quantitative) structure-activity relationship.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Curran LandryUS Food and Drug Administration, Center for Drug Evaluation and Research, 10903 New Hampshire Ave, Silver Spring, MD, 20993, USA.
Marlene T KimUS Food and Drug Administration, Center for Drug Evaluation and Research, 10903 New Hampshire Ave, Silver Spring, MD, 20993, USA.
Naomi L KruhlakUS Food and Drug Administration, Center for Drug Evaluation and Research, 10903 New Hampshire Ave, Silver Spring, MD, 20993, USA.
Kevin P CrossLeadscope Inc., 1393 Dublin Road, Columbus, OH, 43215, USA.
Roustem SaiakhovMulticase Inc., 23811 Chagrin Boulevard, Suite 305, Beachwood, OH, 44122, USA.
Suman ChakravartiMulticase Inc., 23811 Chagrin Boulevard, Suite 305, Beachwood, OH, 44122, USA.
Lidiya StavitskayaUS Food and Drug Administration, Center for Drug Evaluation and Research, 10903 New Hampshire Ave, Silver Spring, MD, 20993, USA. Electronic address: Lidiya.Stavitskaya@fda.hhs.gov.
Center for Drug Evaluation and Research · USSteelcase (United States) · USUnited States Food and Drug Administration · USLeadScope (United States) · US

Funding

Rapid response toxicology prediction platformR44ES026909 · NIEHS · LEADSCOPE, INC. · PI MYATT, GLENN JOHN · 2018 to 2019
$1000k
Intramural FDA HHS FD999999NIEHS NIH HHS R44 ES026909
6 · The paper itself

Abstract

The International Council on Harmonisation (ICH) M7(R1) guideline describes the use of complementary (quantitative) structure-activity relationship ((Q)SAR) models to assess the mutagenic potential of drug impurities in new and generic drugs. Historically, the CASE Ultra and Leadscope software platforms used two different statistical-based models to predict mutations at G-C (guanine-cytosine) and A-T (adenine-thymine) sites, to comprehensively assess bacterial mutagenesis. In the present study, composite bacterial mutagenicity models covering multiple mutation types were developed. These new models contain more than double the number of chemicals (n = 9,254 and n = 13,514) than the corresponding non-composite models and show better toxicophore coverage. Additionally, the use of a single composite bacterial mutagenicity model simplifies impurity analysis in an ICH M7 (Q)SAR workflow by reducing the number of model outputs requiring review. An external validation set of 388 drug impurities representing proprietary pharmaceutical chemical space showed performance statistics ranging from of 66-82% in sensitivity, 91-95% in negative predictivity and 96% in coverage. This effort represents a major enhancement to these (Q)SAR models and their use under ICH M7(R1), leading to improved patient safety through greater predictive accuracy, applicability, and efficiency when assessing the bacterial mutagenic potential of drug impurities.

Indexed as

Quantitative Structure-Activity RelationshipBacteriaComputer SimulationData AccuracyData AnalysisDatabases, FactualDatasets as TopicDrug ContaminationHumansMutagenesisMutagenicity TestsMutagensPatient SafetyResearch DesignToxicologyWorkflowMutagensAmesBacterial mutagenicityComputational toxicologyDrugGenotoxicityICH M7In vitroQSARRegulatory reviewStructure-activity relationship

Identifiers

PMID31586682
PMCPMC6919322
OpenAlexW2978750824

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.