Evidence map›Paper›PMID 31586101›Full record

ArticleNature communications2019

3D extracellular matrix microenvironment in bioengineered tissue models of primary pediatric and adult brain tumors.

Disha Sood, Min Tang-Schomer, Dimitra Pouli, Craig Mizzoni, Nicole Raia, Albert Tai, Knarik Arkun, Julian Wu, Lauren D Black, Bjorn Scheffler and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 115 citations in OpenAlex.

  1. Advances in Engineering Human Tissue Models.Frontiers in bioengineering and biotechnology · 2020
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Understanding Glioblastoma Dynamics Using 3D Organoids and Engineered Extracellular Matrix.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  6. Article
  7. Article
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  10. Review
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  12. iMIRACLE: an Iterative Multi-View Graph Neural Network to Model Intercellular Gene Regulation from Spatial Transcriptomic Data.Proceedings of the ... ACM International Conference on Information & Knowledge Management. ACM International Conference on Information and Knowledge Management · 2024
    Article
  13. Article
  14. Article
  15. Review
  16. Review
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  18. Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Disha SoodDepartment of Biomedical Engineering, Tufts University, Medford, MA, 02155, USA.ORCID http://orcid.org/0000-0003-0405-034X
Min Tang-SchomerJackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA.ORCID http://orcid.org/0000-0001-7585-3890
Dimitra PouliDepartment of Biomedical Engineering, Tufts University, Medford, MA, 02155, USA.ORCID http://orcid.org/0000-0003-0890-9326
Craig MizzoniDepartment of Biomedical Engineering, Tufts University, Medford, MA, 02155, USA.
Nicole RaiaDepartment of Biomedical Engineering, Tufts University, Medford, MA, 02155, USA.ORCID http://orcid.org/0000-0001-9877-4212
Albert TaiGenomics Core, Tufts University School of Medicine, Boston, MA, 02111, USA.ORCID http://orcid.org/0000-0001-7771-0850
Knarik ArkunDepartment of Pathology and Laboratory Medicine, Tufts Medical Center, Boston, MA, 02111, USA.ORCID http://orcid.org/0000-0002-5482-5951
Julian WuDepartment of Neurosurgery, Tufts Medical Center, Boston, MA, 02111, USA.
Lauren D BlackDepartment of Biomedical Engineering, Tufts University, Medford, MA, 02155, USA.ORCID http://orcid.org/0000-0002-7486-5811
Bjorn SchefflerDepartment of Neuroscience, University of Florida, McKnight Brain Institute, Gainesville, FL, 32610, USA.ORCID http://orcid.org/0000-0001-8316-6556
Irene GeorgakoudiDepartment of Biomedical Engineering, Tufts University, Medford, MA, 02155, USA.ORCID http://orcid.org/0000-0002-0049-6697
Dennis A SteindlerDepartment of Neuroscience, University of Florida, McKnight Brain Institute, Gainesville, FL, 32610, USA.ORCID http://orcid.org/0000-0002-9891-8455
David L KaplanDepartment of Biomedical Engineering, Tufts University, Medford, MA, 02155, USA. David.kaplan@tufts.edu.ORCID http://orcid.org/0000-0002-9245-7774
Tufts University · USAllen Institute for Brain Science · USTufts Medical Center · USConnecticut Children's Medical Center · US

Funding

Translational Bioreactors - Engineering Complex TissuesP41EB002520 · NIBIB · TUFTS UNIVERSITY MEDFORD · PI KAPLAN, DAVID L. · 2004 to 2018
$16.7M
Functional three dimensional brain-like tissues to study mechanisms of traumatic brain injuryR01NS092847 · NINDS · TUFTS UNIVERSITY MEDFORD · PI KAPLAN, DAVID L. · 2015 to 2019
$1.8M
STEM/PROGENITOR CELL PROTECTION FOR PARKINSON'S DISEASER01NS055165 · NINDS · UNIVERSITY OF FLORIDA · PI STEINDLER, DENNIS A. · 2007 to 2011
$1.6M
Acquisition of Leica confocal/multiphoton microscopeS10OD021624 · OD · TUFTS UNIVERSITY MEDFORD · PI GEORGAKOUDI, IRENE · 2016 to 2016
$600k
NIBIB NIH HHS P41 EB002520NIH HHS S10 OD021624NINDS NIH HHS R01 NS055165NINDS NIH HHS R01 NS092847
6 · The paper itself

Abstract

Dynamic alterations in the unique brain extracellular matrix (ECM) are involved in malignant brain tumors. Yet studies of brain ECM roles in tumor cell behavior have been difficult due to lack of access to the human brain. We present a tunable 3D bioengineered brain tissue platform by integrating microenvironmental cues of native brain-derived ECMs and live imaging to systematically evaluate patient-derived brain tumor responses. Using pediatric ependymoma and adult glioblastoma as examples, the 3D brain ECM-containing microenvironment with a balance of cell-cell and cell-matrix interactions supports distinctive phenotypes associated with tumor type-specific and ECM-dependent patterns in the tumor cells' transcriptomic and release profiles. Label-free metabolic imaging of the composite model structure identifies metabolically distinct sub-populations within a tumor type and captures extracellular lipid-containing droplets with potential implications in drug response. The versatile bioengineered 3D tumor tissue system sets the stage for mechanistic studies deciphering microenvironmental role in brain tumor progression.

Indexed as

BrainBrain NeoplasmsCell CommunicationChild, PreschoolCoculture TechniquesEpendymomaExtracellular MatrixFemaleGlioblastomaHumansMaleMiddle AgedNeural Stem CellsNeuronsPrimary Cell CultureSpheroids, Cellular

Identifiers

PMID31586101
PMCPMC6778192
OpenAlexW2978170629

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.