Evidence map›Paper›PMID 31585993›Full record

ArticleApplied and environmental microbiology2019

Implications of Mobile Genetic Elements for

Shaoting Li, Shaokang Zhang, Leen Baert, Balamurugan Jagadeesan, Catherine Ngom-Bru, Taylor Griswold, Lee S Katz, Heather A Carleton, Xiangyu Deng

Open access · bronzeAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Applied and environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Prevalence of IncFIB Plasmids Found amongPathogens (Basel, Switzerland) · 2021
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Shaoting LiCenter for Food Safety, Department of Food Science and Technology, University of Georgia, Griffin, Georgia, USA.
Shaokang ZhangCenter for Food Safety, Department of Food Science and Technology, University of Georgia, Griffin, Georgia, USA.
Leen BaertNestlé Institute of Food Safety and Analytical Sciences, Nestlé Research, Vers-chez-les-Blanc, Lausanne, Switzerland.
Balamurugan JagadeesanNestlé Institute of Food Safety and Analytical Sciences, Nestlé Research, Vers-chez-les-Blanc, Lausanne, Switzerland.
Catherine Ngom-BruNestlé Institute of Food Safety and Analytical Sciences, Nestlé Research, Vers-chez-les-Blanc, Lausanne, Switzerland.
Taylor GriswoldEnteric Diseases Laboratory Branch, Centers for Diseases Control and Prevention, Atlanta, Georgia, USA.
Lee S KatzCenter for Food Safety, Department of Food Science and Technology, University of Georgia, Griffin, Georgia, USA.
Heather A CarletonEnteric Diseases Laboratory Branch, Centers for Diseases Control and Prevention, Atlanta, Georgia, USA.
Xiangyu DengCenter for Food Safety, Department of Food Science and Technology, University of Georgia, Griffin, Georgia, USA xdeng@uga.edu.
University of Georgia · USNestlé (Switzerland) · CHCenters for Disease Control and Prevention · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Single-nucleotide polymorphisms (SNPs) are widely used for whole-genome sequencing (WGS)-based subtyping of foodborne pathogens in outbreak and source tracking investigations. Mobile genetic elements (MGEs) are commonly present in bacterial genomes and may affect SNP subtyping results if their evolutionary history and dynamics differ from that of the bacterial chromosomes. Using

Indexed as

Polymorphism, Single NucleotideChromosomes, BacterialDisease OutbreaksGenome, BacterialHumansInterspersed Repetitive SequencesPhylogenyPlasmidsSalmonella entericaSerogroupWhole Genome Sequencingmobile genetic elementsplasmidSalmonellaSNPsubtypingWGSwhole-genome sequencing

Identifiers

PMID31585993
PMCPMC6881799
OpenAlexW2977815448

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.