ArticleApplied and environmental microbiology2019
Metagenomic Signatures of Gut Infections Caused by Different
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Article in Applied and environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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26citing papers in PubMed
–field-weighted citation impact
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Who cites it
26 citing papers in PubMed.
- Gut microbiome dynamics in acute infectious diarrhea: A conceptual framework from acute dysbiosis toward precision restoration (Review).Experimental and therapeutic medicine · 2026Review
- Leveraging strain competition to address antimicrobial resistance with microbiota therapies.Gut microbes · 2025Review
- Agent-based model of the human colon to investigate mechanisms of pathogen colonization resistance.Biophysical journal · 2025Article
- Nanopore Sequencing Allows Recovery of High-Quality Completely Closed Genomes of AllMicroorganisms · 2024Article
- Article
- An ANI gap within bacterial species that advances the definitions of intra-species units.mBio · 2024Article
- Towards estimating the number of strains that make up a natural bacterial population.Nature communications · 2024Article
- Why are so many enteric pathogen infections asymptomatic? Pathogen and gut microbiome characteristics associated with diarrhea symptoms and carriage of diarrheagenicGut microbes · 2023Article
- Escherichia ruysiae May Serve as a Reservoir of Antibiotic Resistance Genes across Multiple Settings and Regions.Microbiology spectrum · 2023Article
- Postglacial adaptations enabled colonization and quasi-clonal dispersal of ammonia-oxidizing archaea in modern European large lakes.Science advances · 2023Article
- Precision metagenomics sequencing for food safety: hybrid assembly of Shiga toxin-producingFrontiers in microbiology · 2023Article
- Higher pathogen load in children from Mozambique vs. USA revealed by comparative fecal microbiome profiling.ISME communications · 2022Article
- Elevated Fecal Mitochondrial DNA from Symptomatic Norovirus Infections Suggests Potential Health Relevance of Human Mitochondrial DNA in Fecal Source Tracking.Environmental science & technology letters · 2022Article
- A longitudinal study of dominant E. coli lineages and antimicrobial resistance in the gut of children living in an upper middle-income country.Journal of global antimicrobial resistance · 2022Article
- A Distinct Plasma Microbiome But Not Gut Microbiome in Patients With Systemic Lupus Erythematosus Compared to Healthy Individuals.The Journal of rheumatology · 2022Article
- Clinical Metagenomics Is Increasingly Accurate and Affordable to Detect Enteric Bacterial Pathogens in Stool.Microorganisms · 2022Article
- Gut microbiome alterations in ICU patients with enteral nutrition-related diarrhea.Frontiers in microbiology · 2022Article
- metaGEM: reconstruction of genome scale metabolic models directly from metagenomes.Nucleic acids research · 2021Article
- Gut microbiome, enteric infections and child growth across a rural-urban gradient: protocol for the ECoMiD prospective cohort study.BMJ open · 2021Article
- The Reliability of Metagenome-Assembled Genomes (MAGs) in Representing Natural Populations: Insights from Comparing MAGs against Isolate Genomes Derived from the Same Fecal Sample.Applied and environmental microbiology · 2021Article
Corrections and comments
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Authors and funding
12 authors.
Angela Peña-GonzalezSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA.ORCID 0000-0003-0684-8179
Maria J Soto-GirónSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA.
Shanon SmithDepartment of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, Georgia, USA.
Jeticia SistrunkDepartment of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, Georgia, USA.
Lorena MonteroInstituto de Microbiologia, Universidad San Francisco de Quito, Quito, Ecuador.
Maritza PáezInstituto de Microbiologia, Universidad San Francisco de Quito, Quito, Ecuador.
Estefanía OrtegaInstituto de Microbiologia, Universidad San Francisco de Quito, Quito, Ecuador.
Janet K HattSchool of Civil and Environmental Engineering, Georgia Institute of Technology, Atlanta, Georgia, USA.
William CevallosCentro de Biomedicina, Universidad Central del Ecuador, Quito, Ecuador.
Gabriel TruebaInstituto de Microbiologia, Universidad San Francisco de Quito, Quito, Ecuador.ORCID 0000-0003-2617-9021
Karen LevyDepartment of Environmental Health, Rollins School of Public Health, Emory University, Atlanta, Georgia, USA Karen.levy@emory.edu kostas.konstantinidis@gatech.edu.ORCID 0000-0002-0968-9401
Konstantinos T KonstantinidisSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia, USA Karen.levy@emory.edu kostas.konstantinidis@gatech.edu.
Funding
Gut microbiome, enteric infections and child growth across a rurual urban gradientR01AI137679 · NIAID · UNIVERSITY OF WASHINGTON · PI EISENBERG, JOSEPH N. S., LEVY, KAREN · 2018 to 2023
$5.3MImpacts of Human Movement on Regional Strain Distribution of Diarrheagenic E.coliK01AI103544 · NIAID · EMORY UNIVERSITY · PI LEVY, KAREN · 2013 to 2017
$655kNIAID NIH HHS K01 AI103544NIAID NIH HHS R01 AI137679
Abstract
PubMed holds no abstract for this paper.
Indexed as
MetagenomeCase-Control StudiesChildChild, PreschoolDiarrheaDisease OutbreaksEcuadorEscherichia coliEscherichia coli InfectionsFecesGastrointestinal MicrobiomeHumansInfantRNA, Ribosomal, 16SVirulenceVirulence FactorsRNA, Ribosomal, 16SVirulence Factors16S rRNAclinical metagenomicsEcuadorEscherichia coligut microbiomeinfectious diarrheametagenomicspathotypes
Identifiers
What OpenQuestion holds
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.