Evidence map›Paper›PMID 31584943›Full record

ArticlePLoS biology2019

A photoactivatable crosslinking system reveals protein interactions in the Toxoplasma gondii inner membrane complex.

Charles Paul Choi, Andy Seong Moon, Peter Sungmin Back, Yasaman Jami-Alahmadi, Ajay Amar Vashisht, James Akira Wohlschlegel, Peter John Bradley

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

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  14. Co-dependent formation of thebioRxiv : the preprint server for biology · 2024
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  17. ThemSphere · 2023
    Article
  18. Article
  19. Genetically encoded crosslinkers to address protein-protein interactions.Protein science : a publication of the Protein Society · 2023
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Charles Paul ChoiMolecular Biology Institute, University of California, Los Angeles, Los Angeles, California, United States of America.
Andy Seong MoonDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, Los Angeles, California, United States of America.
Peter Sungmin BackMolecular Biology Institute, University of California, Los Angeles, Los Angeles, California, United States of America.
Yasaman Jami-AlahmadiDepartment of Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California, United States of America.ORCID 0000-0001-8289-2222
Ajay Amar VashishtDepartment of Biological Chemistry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California, United States of America.
James Akira WohlschlegelMolecular Biology Institute, University of California, Los Angeles, Los Angeles, California, United States of America.ORCID 0000-0003-3399-901X
Peter John BradleyMolecular Biology Institute, University of California, Los Angeles, Los Angeles, California, United States of America.ORCID 0000-0002-8481-0638
University of California, Los Angeles · US

Funding

UCLA NIGMS T32 Program AssessmentT32GM007185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TORRES, JORGE · 1985 to 2020
$21.7M
Proteolytic Control of Iron Metabolism by the Ubiquitin Ligase FBXL5R01GM089778 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WOHLSCHLEGEL, JAMES AKIRA · 2010 to 2023
$4.0M
Functional Analysis of Novel Components of the Toxoplasma Inner Membrane ComplexR01AI123360 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Peter John Bradley · 2017 to 2026
$3.8M
An unnatural amino acid system for capturing protein-protein interactions in Toxoplasma gondiiR21AI135661 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BRADLEY, PETER JOHN · 2019 to 2020
$410k
NIAID NIH HHS R01 AI123360NIAID NIH HHS R21 AI135661NIGMS NIH HHS R01 GM089778NIGMS NIH HHS T32 GM007185
6 · The paper itself

Abstract

The Toxoplasma gondii inner membrane complex (IMC) is an important organelle involved in parasite motility and replication. The IMC resides beneath the parasite's plasma membrane and is composed of both membrane and cytoskeletal components. Although the protein composition of the IMC is becoming better understood, the protein-protein associations that enable proper functioning of the organelle remain largely unknown. Determining protein interactions in the IMC cytoskeletal network is particularly challenging, as disrupting the cytoskeleton requires conditions that disrupt protein complexes. To circumvent this problem, we demonstrate the application of a photoreactive unnatural amino acid (UAA) crosslinking system to capture protein interactions in the native intracellular environment. In addition to identifying binding partners, the UAA approach maps the binding interface of the bait protein used for crosslinking, providing structural information of the interacting proteins. We apply this technology to the essential IMC protein ILP1 and demonstrate that distinct regions of its C-terminal coiled-coil domain crosslink to the alveolins IMC3 and IMC6, as well as IMC27. We also show that the IMC3 C-terminal domain and the IMC6 N-terminal domain are necessary for binding to ILP1, further mapping interactions between ILP1 and the cytoskeleton. Together, this study develops a new approach to study protein-protein interactions in Toxoplasma and provides the first insight into the architecture of the cytoskeletal network of the apicomplexan IMC.

Indexed as

AzidesCell MembraneCross-Linking ReagentsCytoskeletal ProteinsCytoskeletonGene ExpressionIntracellular MembranesPhenylalaninePhotochemical ProcessesProtein BindingProtein Interaction Domains and MotifsProtein Interaction MappingProtozoan ProteinsToxoplasmaUltraviolet Rays4-azidophenylalanineAzidesCross-Linking ReagentsCytoskeletal ProteinsPhenylalanineProtozoan Proteins

Identifiers

PMID31584943
PMCPMC6795473
OpenAlexW2978474841

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.