Evidence map›Paper›PMID 31584014›Full record

ArticleActa crystallographica. Section F, Structural biology communications2019

Structure of an RNA helix with pyrimidine mismatches and cross-strand stacking.

Eric J Montemayor, Johanna M Virta, Lauren D Hagler, Steven C Zimmerman, Samuel E Butcher

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Eric J MontemayorDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.ORCID 0000-0001-7883-7706
Johanna M VirtaDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.
Lauren D HaglerDepartment of Chemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
Steven C ZimmermanDepartment of Chemistry, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
Samuel E ButcherDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, USA.

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Training Program in Chemistry-Interface with BiologyT32GM070421 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI HERGENROTHER, PAUL · 2005 to 2019
$5.4M
Biophysical investigations of RNA complexes essential for gene expressionR35GM118131 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Samuel E Butcher · 2016 to 2026
$5.1M
Training Program at the Chemistry Biology InterfaceT32GM136629 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Paul Hergenrother · 2020 to 2026
$4.5M
Small Molecule Approaches to Targeting the DNA and RNA in Myotonic DystrophyR01AR069645 · NIAMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ZIMMERMAN, STEVEN C. · 2017 to 2021
$2.2M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Targeting CUG Expansions for the Treatment of Myotonic DystrophyR01AR058361 · NIAMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI HERGENROTHER, PAUL, ZIMMERMAN, STEVEN C. · 2009 to 2013
$1.7M
National Institutes of Health, National Institute of Arthritis and Musculoskeletal and Skin Diseases R01AR069645National Institutes of Health, National Institute of General Medical Sciences R35GM118131NCRR NIH HHS S10 RR029205NIAMS NIH HHS R01 AR058361NIAMS NIH HHS R01 AR069645NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R35 GM118131NIGMS NIH HHS T32 GM070421NIGMS NIH HHS T32 GM136629NIH HHS NRSA 1-T-32-GM070421
6 · The paper itself

Abstract

The structure of a 22-base-pair RNA helix with mismatched pyrimidine base pairs is reported. The helix contains two symmetry-related CUG sequences: a triplet-repeat motif implicated in myotonic dystrophy type 1. The CUG repeat contains a U-U mismatch sandwiched between Watson-Crick pairs. Additionally, the center of the helix contains a dimerized UUCG motif with tandem pyrimidine (U-C/C-U) mismatches flanked by U-G wobble pairs. This region of the structure is significantly different from previously observed structures that share the same sequence and neighboring base pairs. The tandem pyrimidine mismatches are unusual and display sheared, cross-strand stacking geometries that locally constrict the helical width, a type of stacking previously associated with purines in internal loops. Thus, pyrimidine-rich regions of RNA have a high degree of structural diversity.

Indexed as

Base Pair MismatchCrystallography, X-RayHydrogen BondingModels, MolecularNucleic Acid ConformationPyrimidinesRepetitive Sequences, Nucleic AcidRNAPyrimidinesRNAmyotonic dystrophy type 1pyrimidine mismatchesRNA

Identifiers

PMID31584014
PMCPMC6777134

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.