Evidence map›Paper›PMID 31583571›Full record

ArticleMolecular biology reports2020

Stable reference genes for expression studies in breast muscle of normal and white striping-affected chickens.

Caroline Michele Marinho Marciano, Adriana Mércia Guaratini Ibelli, Jane de Oliveira Peixoto, Igor Ricardo Savoldi, Kamilla Bleil do Carmo, Lana Teixeira Fernandes, Mônica Corrêa Ledur

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In one paragraph

Article in Molecular biology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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  3. Animals : an open access journal from MDPI · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Caroline Michele Marinho MarcianoPrograma de Pós-Graduação em Zootecnia, Universidade do Estado de Santa Catarina, UDESC-Oeste, Rua Beloni Trombeta Zanin 680E, Chapecó, Santa Catarina, 89815-630, Brazil.ORCID https://orcid.org/0000-0002-1992-6212
Adriana Mércia Guaratini IbelliEmbrapa Suínos e Aves, Rodovia BR-153, Km 110, Distrito de Tamanduá, Caixa Postal: 321, Concórdia, Santa Catarina, 89715-899, Brazil.ORCID http://orcid.org/0000-0003-0626-8879
Jane de Oliveira PeixotoEmbrapa Suínos e Aves, Rodovia BR-153, Km 110, Distrito de Tamanduá, Caixa Postal: 321, Concórdia, Santa Catarina, 89715-899, Brazil.ORCID http://orcid.org/0000-0002-0644-3684
Igor Ricardo SavoldiPrograma de Pós-Graduação em Zootecnia, Universidade do Estado de Santa Catarina, UDESC-Oeste, Rua Beloni Trombeta Zanin 680E, Chapecó, Santa Catarina, 89815-630, Brazil.ORCID http://orcid.org/0000-0001-6821-1523
Kamilla Bleil do CarmoUniversidade do Contestado, Rua Victor Sopelsa, 3000, Concórdia, Santa Catarina, 89711-330, Brazil.ORCID http://orcid.org/0000-0003-3985-5068
Lana Teixeira FernandesCentro de Diagnóstico de Sanidade Animal, Rodovia BR-153, Km 110, Distrito de Tamanduá, Caixa Postal: 321, Concórdia, Santa Catarina, 89715-899, Brazil.ORCID http://orcid.org/0000-0001-7610-5843
Mônica Corrêa LedurPrograma de Pós-Graduação em Zootecnia, Universidade do Estado de Santa Catarina, UDESC-Oeste, Rua Beloni Trombeta Zanin 680E, Chapecó, Santa Catarina, 89815-630, Brazil. monica.ledur@embrapa.br.ORCID http://orcid.org/0000-0002-2645-4735
Universidade do Estado de Santa Catarina · BRBrazilian Agricultural Research Corporation · BRUniversidade do Contestado · BR

Funding

Brazilian Agricultural Research Corporation (EMBRAPA) 01.11.07.002.04.03
6 · The paper itself

Abstract

The normalization with proper reference genes is a crucial step to obtain accurate mRNA expression levels in quantitative PCR (qPCR) studies. Therefore, in this study, 10 reference candidate genes were evaluated to determine their stability in normal pectoralis major muscle of broilers and those counterparts affected with White Striping (WS) myopathy at 42 days age. Four different tools were used for ranking the most stable genes: GeNorm, NormFinder, BestKeeper and Comparative Ct (ΔCt), and a general ranking was performed using the RankAggreg tool to select the best reference genes among all tools. From the 10 genes evaluated in the breast muscle of broilers, 8 were amplified. Most of the algorithms/tools indicated the same two genes, RPL30 and RPL5, as the most stable in the broilers breast muscle. In addition, there was agreement among the tools for the least stable genes: MRPS27, GAPDH and RPLP1 in the broilers breast muscle. Therefore, it is interesting to note that even with different tools for evaluating gene expression, there was consensus on the most and least stable genes. These results indicate that the Ribosomal protein L30 (RPL30) and Ribosomal protein L5 (RPL5) can be recommended for accurate normalization in qPCR studies with chicken pectoralis major muscle affected with White Striping and other myopathies.

Indexed as

AnimalsChickensGene ExpressionGene Expression ProfilingGene Expression RegulationGenes, EssentialMuscular DiseasesPectoralis MusclesPoultry DiseasesReal-Time Polymerase Chain ReactionReference StandardsBroilersEndogenous genesMyopathiesNormalizationStability

Identifiers

PMID31583571
OpenAlexW2979249487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.