Evidence map›Paper›PMID 31583330›Full record

ArticlePathogens & immunity2019

α-Defensin HD5 Stabilizes

Neetu M Gulati, Masaru Miyagi, Mayim E Wiens, Jason G Smith, Phoebe L Stewart

Open access · diamondAbstract read
In one paragraph

Article in Pathogens & immunity, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Review
  6. Roles of Antimicrobial Peptides in Gynecological Cancers.International journal of molecular sciences · 2022
    Review
  7. Article
  8. Review
  9. Review
  10. Defensin-driven viral evolution.PLoS pathogens · 2020
    Article
  11. Article
  12. Review
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Neetu M GulatiDepartment of Pharmacology, Case Western Reserve University, Cleveland, Ohio.
Masaru MiyagiDepartment of Pharmacology, Case Western Reserve University, Cleveland, Ohio.
Mayim E WiensDepartment of Microbiology, University of Washington, Seattle, Washington.
Jason G SmithDepartment of Microbiology, University of Washington, Seattle, Washington.
Phoebe L StewartDepartment of Pharmacology, Case Western Reserve University, Cleveland, Ohio.
Case Western Reserve University · USUniversity of Washington · US

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Anti-viral Mechanisms of DefensinsR01AI104920 · NIAID · UNIVERSITY OF WASHINGTON · PI MCKENNA, ROBERT, SMITH, JASON G · 2014 to 2023
$6.1M
PREDOCTORAL TRAINING PROGRAM IN MOLECULAR THERAPEUTICST32GM008803 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI MIEYAL, JOHN J, NIEMAN, MARVIN THOMAS · 2001 to 2023
$4.2M
NIAID NIH HHS R01 AI104920NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32 GM008803
6 · The paper itself

Abstract

background

methodsWe have used cryo-electron microscopy (cryoEM), mass spectrometry (MS) crosslinking and differential lysine modification studies, and molecular dynamics (MD) simulations to probe the interaction of HPV16 pseudovirions (PsVs) with HD5.

resultsCryoEM single particle reconstruction did not reveal HD5 density on the capsid surface. Rather, increased density was observed under the capsid shell in the presence of HD5. MS studies indicate that HD5 binds near the L1 and L2 capsid proteins and specifically near the C-terminal region of L1. MD simulations indicate that favorable electrostatic interactions can be formed between HD5 and the L1 C-terminal tail.

conclusionsA model is presented for how HD5 affects HPV16 structure and cell entry. In this model, HD5 binds to disordered regions of L1 and L2 protruding from the icosahedrally ordered capsid. HD5 acts to cement interactions between L1 and L2 and leads to a closer association of the L2/genome core with the L1 capsid. This model provides a structural rationale for our prior observation that HD5 interferes with the separation of L1 from the L2/genome complex during cell entry. GRAPHICAL ABSTRACT:

Indexed as

alpha-DefensinsCryo-electron MicroscopyHuman papillomavirus 16Intrinsically Disordered ProteinsMass SpectrometryMolecular DynamicsVirus Host Interactions

Identifiers

PMID31583330
PMCPMC6755940
OpenAlexW2972591790

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.