Evidence map›Paper›PMID 31583116›Full record

ArticleNPJ systems biology and applications2019

Osmolyte homeostasis controls single-cell growth rate and maximum cell size of

Tom Altenburg, Björn Goldenbogen, Jannis Uhlendorf, Edda Klipp

Open access · goldAbstract read
In one paragraph

Article in NPJ systems biology and applications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  4. Review
  5. Phenotypic consequences of logarithmic signaling in MAPK stress response.bioRxiv : the preprint server for biology · 2023
    Article
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  8. Review
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  11. Review
  12. Article
  13. The environmental stress response causes ribosome loss in aneuploid yeast cells.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Tom Altenburg *1Theoretical Biophysics, Humboldt-Universität zu Berlin, Berlin, Germany.ORCID 0000-0002-6435-4073
Björn Goldenbogen *1Theoretical Biophysics, Humboldt-Universität zu Berlin, Berlin, Germany.ORCID 0000-0002-1456-5278
Jannis Uhlendorf1Theoretical Biophysics, Humboldt-Universität zu Berlin, Berlin, Germany.
Edda Klipp1Theoretical Biophysics, Humboldt-Universität zu Berlin, Berlin, Germany.ORCID 0000-0002-0567-7075
Humboldt-Universität zu Berlin · DERobert Koch Institute · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell growth is well described at the population level, but precisely how nutrient and water uptake and cell wall expansion drive the growth of single cells is poorly understood. Supported by measurements of single-cell growth trajectories and cell wall elasticity, we present a single-cell growth model for yeast. The model links the thermodynamic quantities, such as turgor pressure, osmolarity, cell wall elasto-plasticity, and cell size, applying concepts from rheology and thin shell theory. It reproduces cell size dynamics during single-cell growth, budding, and hyper-osmotic or hypo-osmotic stress. We find that single-cell growth rate and final size are primarily governed by osmolyte uptake and consumption, while bud expansion requires additionally different cell wall extensibilities between mother and bud. Based on first principles the model provides a more accurate description of size dynamics than previous attempts and its analytical simplification allows for easy combination with models for other cell processes.

Indexed as

Cell CycleCell DivisionCell SizeCell WallElasticityHomeostasisModels, BiologicalOsmolar ConcentrationOsmoregulationOsmotic PressureReproduction, AsexualSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSaccharomyces cerevisiae ProteinsBiophysicsMicrobiologySystems biology

Identifiers

PMID31583116
PMCPMC6763471
OpenAlexW2977158954

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.