Evidence map›Paper›PMID 31582430›Full record

ArticleGenes & development2019

Structural basis for distinct roles of SMAD2 and SMAD3 in FOXH1 pioneer-directed TGF-β signaling.

Eric Aragón, Qiong Wang, Yilong Zou, Sophie M Morgani, Lidia Ruiz, Zuzanna Kaczmarska, Jie Su, Carles Torner, Lin Tian, Jing Hu and 7 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 106 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 3 countries.

Eric Aragón *Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona 08028, Spain.
Qiong Wang *Cancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Yilong Zou *Cancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Sophie M MorganiDevelopmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Lidia RuizInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona 08028, Spain.
Zuzanna KaczmarskaEMBL Grenoble, 38042 Grenoble Cedex 9, France.
Jie SuCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Carles TornerInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona 08028, Spain.
Lin TianCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Jing HuCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Weiping ShuCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Saloni AgrawalCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Tiago GomesInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona 08028, Spain.
José A MárquezEMBL Grenoble, 38042 Grenoble Cedex 9, France.
Anna-Katerina HadjantonakisDevelopmental Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Maria J MaciasInstitute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, Barcelona 08028, Spain.
Joan MassaguéCancer Biology and Genetics Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065, USA.
Memorial Sloan Kettering Cancer Center · USInstitute for Research in Biomedicine · ESEuropean Molecular Biology Laboratory · FRInstitució Catalana de Recerca i Estudis Avançats · ES

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Morphogenesis of mammalian gut endodermR01DK084391 · NIDDK · SLOAN-KETTERING INST CAN RESEARCH · PI HADJANTONAKIS, ANNA-KATERINA · 2009 to 2018
$4.1M
TGFB-SMAD Signaling in Stem Cell Differentiation and Tumor SuppressionR01CA034610 · NCI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MASSAGUE, JOAN · 1985 to 2019
$2.3M
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA034610NIDDK NIH HHS R01 DK084391Wellcome Trust
6 · The paper itself

Abstract

TGF-β receptors phosphorylate SMAD2 and SMAD3 transcription factors, which then form heterotrimeric complexes with SMAD4 and cooperate with context-specific transcription factors to activate target genes. Here we provide biochemical and structural evidence showing that binding of SMAD2 to DNA depends on the conformation of the E3 insert, a structural element unique to SMAD2 and previously thought to render SMAD2 unable to bind DNA. Based on this finding, we further delineate TGF-β signal transduction by defining distinct roles for SMAD2 and SMAD3 with the forkhead pioneer factor FOXH1 as a partner in the regulation of differentiation genes in mouse mesendoderm precursors. FOXH1 is prebound to target sites in these loci and recruits SMAD3 independently of TGF-β signals, whereas SMAD2 remains predominantly cytoplasmic in the basal state and set to bind SMAD4 and join SMAD3:FOXH1 at target promoters in response to Nodal TGF-β signals. The results support a model in which signal-independent binding of SMAD3 and FOXH1 prime mesendoderm differentiation gene promoters for activation, and signal-driven SMAD2:SMAD4 binds to promoters that are preloaded with SMAD3:FOXH1 to activate transcription.

Indexed as

Gene Expression RegulationModels, MolecularSignal TransductionSmad2 ProteinSmad3 ProteinAnimalsEmbryo, MammalianForkhead Transcription FactorsMiceMice, Inbred C57BLProtein BindingProtein Structure, TertiaryTransforming Growth Factor betaForkhead Transcription FactorsFoxh1 protein, mouseSmad2 ProteinSmad3 ProteinTransforming Growth Factor betaembryonic stem cellFOXH1mesendoderm differentiationpioneer transcription factorSMAD2SMAD2 structureSMAD3TGF-β signaling

Identifiers

PMID31582430
PMCPMC6824466
OpenAlexW2978202256

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.