Evidence map›Paper›PMID 31580842›Full record

ArticleThe Journal of investigative dermatology2020

MicroRNA Ratios Distinguish Melanomas from Nevi.

Rodrigo Torres, Ursula E Lang, Miroslav Hejna, Samuel J Shelton, Nancy M Joseph, A Hunter Shain, Iwei Yeh, Maria L Wei, Michael C Oldham, Boris C Bastian and 1 more

Abstract read
In one paragraph

Article in The Journal of investigative dermatology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Review
  6. Transdermal delivery of ultradeformable cationic liposomes complexed with miR211-5p (UCL-211) stabilizes BRAFV600E+ melanocytic nevi.Journal of controlled release : official journal of the Controlled Release Society · 2025
    Article
  7. Article
  8. Article
  9. MicroRNA Signatures Associated with Basal Cell Carcinoma Subtypes.JID innovations : skin science from molecules to population health · 2024
    Article
  10. Artificial intelligence and skin cancer.Frontiers in medicine · 2024
    Review
  11. A New Approach to Melanoma Treatment: microRNAs.Current topics in medicinal chemistry · 2024
    Review
  12. Article
  13. The journey from melanocytes to melanoma.Nature reviews. Cancer · 2023
    Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. BRAFeLife · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Rodrigo TorresDepartment of Dermatology, University of California, San Francisco, California, USA.
Ursula E LangDepartment of Dermatology, University of California, San Francisco, California, USA; Department of Pathology, University of California, San Francisco, California, USA.
Miroslav HejnaDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA; Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Samuel J SheltonDepartment of Neurological Surgery, University of California, San Francisco, California, USA.
Nancy M JosephDepartment of Pathology, University of California, San Francisco, California, USA.
A Hunter ShainDepartment of Dermatology, University of California, San Francisco, California, USA.
Iwei YehDepartment of Dermatology, University of California, San Francisco, California, USA; Department of Pathology, University of California, San Francisco, California, USA.
Maria L WeiDepartment of Dermatology, University of California, San Francisco, California, USA; San Francisco Veterans Affairs Medical Center, San Francisco, California, USA.
Michael C OldhamDepartment of Neurological Surgery, University of California, San Francisco, California, USA.
Boris C BastianDepartment of Dermatology, University of California, San Francisco, California, USA; Department of Pathology, University of California, San Francisco, California, USA.
Robert L Judson-TorresDepartment of Dermatology, University of California, San Francisco, California, USA; Huntsman Cancer Institute, University of Utah, Salt Lake City, Utah, USA; Department of Dermatology, University of Utah School of Medicine, Salt Lake City, Utah, USA. Electronic address: judsontorreslab@gmail.com.

Funding

Decoding the molecular basis of cellular identity in the human brainR01MH113896 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI OLDHAM, MICHAEL CLARK · 2018 to 2022
$2.0M
MicroRNA-Based Detection of Barriers to Melanoma ProgressionDP5OD019787 · OD · UNIVERSITY OF UTAH · PI JUDSON-TORRES, ROBERT LAIRD · 2014 to 2018
$1.9M
Defining the role of SWI/SNF chromatin remodeling complex mutations during melanoma progressionK22CA217997 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHAIN, ALAN HUNTER · 2018 to 2021
$651k
NCI NIH HHS K22 CA217997NIH HHS DP5 OD019787NIMH NIH HHS R01 MH113896
6 · The paper itself

Abstract

The use of microRNAs as biomarkers has been proposed for many diseases, including the diagnosis of melanoma. Although hundreds of microRNAs have been identified as differentially expressed in melanomas as compared to benign melanocytic lesions, a limited consensus has been achieved across studies, constraining the effective use of these potentially useful markers. In this study, we applied a machine learning-based pipeline to a dataset consisting of genetic features, clinical features, and next-generation microRNA sequencing from micro-dissected formalin-fixed paraffin embedded melanomas and their adjacent benign precursor nevi. We identified patient age and tumor cellularity as variables that frequently confound the measured expression of potentially diagnostic microRNAs. By employing the ratios of microRNAs that were either enriched or depleted in melanoma compared to the nevi as a normalization strategy, we developed a model that classified all the available published cohorts with an area under the receiver operating characteristic curve of 0.98. External validation on an independent cohort classified lesions with 81% sensitivity and 88% specificity and was uninfluenced by the tumor content of the sample or patient age.

Indexed as

Biomarkers, TumorDatasets as TopicDiagnosis, DifferentialHigh-Throughput Nucleotide SequencingHumansMachine LearningMelanocytesMelanomaMicroRNAsNevusPrognosisROC CurveSensitivity and SpecificitySequence Analysis, RNASkin NeoplasmsBiomarkers, TumorMicroRNAs

Identifiers

PMID31580842
PMCPMC6926155

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.