Evidence map›Paper›PMID 31580832›Full record

ArticleChemico-biological interactions2019

Clinical implications of ALDH1A1 and ALDH1A3 mRNA expression in melanoma subtypes.

Jenny Mae Samson, Dinoop Ravindran Menon, Derek E Smith, Erika Baird, Takayuki Kitano, Dexiang Gao, Aik-Choon Tan, Mayumi Fujita

Open access · greenAbstract read
In one paragraph

Article in Chemico-biological interactions, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. The Significance of Aldehyde Dehydrogenase 1 in Cancers.International journal of molecular sciences · 2024
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  10. Functionalization of Nanomaterials for Skin Cancer Theranostics.Frontiers in bioengineering and biotechnology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 2 countries.

Jenny Mae SamsonDepartment of Dermatology, University of Colorado Denver, Aurora, CO, 80045, United States.
Dinoop Ravindran MenonDepartment of Dermatology, University of Colorado Denver, Aurora, CO, 80045, United States.
Derek E SmithDepartment of Biostatistics & Informatics, University of Colorado Denver, Aurora, CO 80045, United States.
Erika BairdDepartment of Dermatology, University of Colorado Denver, Aurora, CO, 80045, United States.
Takayuki KitanoDepartment of Dermatology, University of Colorado Denver, Aurora, CO, 80045, United States; School of Medicine, University of the Ryukyus, Nishihara, Okinawa, 903-0215, Japan.
Dexiang GaoDepartment of Biostatistics & Informatics, University of Colorado Denver, Aurora, CO 80045, United States.
Aik-Choon TanDivision of Medical Oncology, Department of Medicine, University of Colorado Denver, Aurora, CO, 80045, United States. Electronic address: aikchoon.tan@cuanschutz.edu.
Mayumi FujitaDepartment of Dermatology, University of Colorado Denver, Aurora, CO, 80045, United States; Denver VA Medical Center, Denver, CO, 80220, United States; Department of Immunology & Microbiology, University of Colorado Denver, Aurora, CO, 80045, United States. Electronic address: mayumi.fujita@cuanschutz.edu.
University of Colorado Denver · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Modulation of Inflammasome-mediated cytokine activation by EGCG in human melanomaR01CA197919 · NCI · UNIVERSITY OF COLORADO DENVER · PI FUJITA, MAYUMI · 2016 to 2020
$1.9M
Autoinflammation in Human MelanomaI01BX001228 · VA · VA EASTERN COLORADO HEALTH CARE SYSTEM · PI FUJITA, MAYUMI · 2012 to 2022
–
BLRD VA I01 BX001228NCI NIH HHS P30 CA046934NCI NIH HHS R01 CA197919
6 · The paper itself

Abstract

Aldehyde dehydrogenase (ALDH) activity is not only a valuable marker for cancer cells with stem-like features, but also plays a vital role in drug resistance and disease progression in many tumors including melanoma. However, the precise role of ALDH activity in patient prognosis remains unclear. In this study, using the Cancer Genome Atlas (TCGA) RNA-sequencing expression data, we analyzed gene expression of ALDH isozymes in melanoma tumors to define the expression patterns and the prognostic and predictive values of these enzymes. We found that ALDH1A1 and ALDH1A3 had both higher and broader expression ranges in melanoma patients, and that ALDH1A3 expression correlated with better overall survival in metastatic melanoma. Further, stratification of the TCGA cohorts by the mutational subtypes of melanoma specifically revealed that expression of ALDH1A3 correlated with better prognosis in metastatic BRAF-mutant melanoma while expression of ALDH1A1 correlated with better prognosis in BRAF wild-type melanoma. Gene set enrichment analysis (GSEA) of these cohorts identified upregulation in oxidative phosphorylation, adipogenesis, and fatty acid metabolism signaling in ALDH1A

Indexed as

AgedAldehyde DehydrogenaseAldehyde Dehydrogenase 1 FamilyAldehyde OxidoreductasesFemaleGene Expression Regulation, NeoplasticHumansKaplan-Meier EstimateMaleMelanomaMiddle AgedMutationPrognosisProto-Oncogene Proteins B-rafRetinal DehydrogenaseRNA, MessengerAldehyde DehydrogenaseAldehyde Dehydrogenase 1 Familyaldehyde dehydrogenase (NAD(P)+)Aldehyde OxidoreductasesALDH1A1 protein, humanBRAF protein, humanProto-Oncogene Proteins B-rafRetinal DehydrogenaseRNA, MessengerALDH1A1ALDH1A3BRAF/MEK inhibitor responseGSEAMelanoma patient prognosis

Identifiers

PMID31580832
PMCPMC6916670
OpenAlexW2978685413

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.