ArticleGenome biology and evolution2019
Resolving Phylogenetic Relationships within Passeriformes Based on Mitochondrial Genes and Inferring the Evolution of Their Mitogenomes in Terms of Duplications.
Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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22 citing papers in PubMed.
- BROOQS: Spectral Methods Resolve Level-1 Hybridization Cycles without Tests of Symmetry.bioRxiv : the preprint server for biology · 2026Article
- Mitogenomes Reveal Novel Phylogeographic Patterns and Temporal Evolutionary History of Barn Swallows and Close Relatives.International journal of molecular sciences · 2026Article
- Genome-wide SNVs revealed reticulate evolutionary history of a Eurasian-African songbird radiation (Zoological research · 2026Article
- Birds That Don't Exist: Niche Pre-Emption as a Constraint on Morphological Evolution in the Passeroidea.Ecology letters · 2026Article
- Assessment of phylogenetic informativeness in mitochondrial and nuclear genes for mammalian systematics using sparse learning.Frontiers in bioinformatics · 2025Article
- Insights into Mitochondrial Rearrangements and Selection in Accipitrid Mitogenomes, with New Data onGenes · 2024Article
- SturnidaeAnimals : an open access journal from MDPI · 2024Article
- Selected Lark Mitochondrial Genomes Provide Insights into the Evolution of Second Control Region with Tandem Repeats in Alaudidae (Aves, Passeriformes).Life (Basel, Switzerland) · 2024Article
- Taxonomic Status and Phylogenetic Relationship of the Charadriidae Family Based on Complete Mitogenomes.Current genomics · 2023Article
- Mitochondrial genome characteristics of sixPeerJ · 2023Article
- Mitogenomic Codon Usage Patterns of Superfamily Certhioidea (Aves, Passeriformes): Insights into Asymmetrical Bias and Phylogenetic Implications.Animals : an open access journal from MDPI · 2022Article
- The Mitogenome Relationships and Phylogeography of Barn Swallows (Hirundo rustica).Molecular biology and evolution · 2022Article
- Comparative mitogenomics of the genusZooKeys · 2022Article
- Sharp Increase of Problematic Mitogenomes of Birds: Causes, Consequences, and Remedies.Genome biology and evolution · 2021Article
- Mitogenomes of Accipitriformes and Cathartiformes Were Subjected to Ancestral and Recent Duplications Followed by Gradual Degeneration.Genome biology and evolution · 2021Article
- Complete vertebrate mitogenomes reveal widespread repeats and gene duplications.Genome biology · 2021Article
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- The first mitogenome of Lesser Whitethroat,Mitochondrial DNA. Part B, Resources · 2021Article
- New view on the organization and evolution of Palaeognathae mitogenomes poses the question on the ancestral gene rearrangement in Aves.BMC genomics · 2020Article
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4 authors.
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Abstract
Mitochondrial genes are placed on one molecule, which implies that they should carry consistent phylogenetic information. Following this advantage, we present a well-supported phylogeny based on mitochondrial genomes from almost 300 representatives of Passeriformes, the most numerous and differentiated Aves order. The analyses resolved the phylogenetic position of paraphyletic Basal and Transitional Oscines. Passerida occurred divided into two groups, one containing Paroidea and Sylvioidea, whereas the other, Passeroidea and Muscicapoidea. Analyses of mitogenomes showed four types of rearrangements including a duplicated control region (CR) with adjacent genes. Mapping the presence and absence of duplications onto the phylogenetic tree revealed that the duplication was the ancestral state for passerines and was maintained in early diverged lineages. Next, the duplication could be lost and occurred independently at least four times according to the most parsimonious scenario. In some lineages, two CR copies have been inherited from an ancient duplication and highly diverged, whereas in others, the second copy became similar to the first one due to concerted evolution. The second CR copies accumulated over twice as many substitutions as the first ones. However, the second CRs were not completely eliminated and were retained for a long time, which suggests that both regions can fulfill an important role in mitogenomes. Phylogenetic analyses based on CR sequences subjected to the complex evolution can produce tree topologies inconsistent with real evolutionary relationships between species. Passerines with two CRs showed a higher metabolic rate in relation to their body mass.
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