Evidence map›Paper›PMID 31579644›Full record

ArticlePublic health action2019

Drug-resistant tuberculosis diagnosis since Xpert

E K Lavu, K Johnson, J Banamu, S Pandey, R Carter, C Coulter, P Aia, S S Majumdar, B J Marais, S M Graham and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Public health action, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

E K LavuCentral Public Health Laboratory, Port Moresby, Papua New Guinea (PNG).
K JohnsonCentral Public Health Laboratory, Port Moresby, Papua New Guinea (PNG).
J BanamuCentral Public Health Laboratory, Port Moresby, Papua New Guinea (PNG).
S PandeyQueensland Mycobacterium Reference Laboratory, Pathology Queensland Central Laboratory at Royal Brisbane Hospital, Brisbane, Queensland, Australia.
R CarterQueensland Mycobacterium Reference Laboratory, Pathology Queensland Central Laboratory at Royal Brisbane Hospital, Brisbane, Queensland, Australia.
C CoulterQueensland Mycobacterium Reference Laboratory, Pathology Queensland Central Laboratory at Royal Brisbane Hospital, Brisbane, Queensland, Australia.
P AiaPapua New Guinea National TB Programme, Port Moresby, PNG.
S S MajumdarBurnet Institute, Melbourne, Victoria, Australia.
B J MaraisMarie Bashir Institute for Infectious Diseases and Biosecurity, University of Sydney, Sydney, New South Wales, Australia.
S M GrahamBurnet Institute, Melbourne, Victoria, Australia.
J VinceSchool of Medicine and Health Sciences, University of Papua New Guinea, Port Moresby, PNG.
National Department of Health · PGRoyal Brisbane and Women's Hospital · AUBurnet Institute · AUPort Moresby General Hospital · PGRoyal Children's Hospital · AUTaronga Conservation Society Australia · AUUniversity of Papua New Guinea · PG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

settingXpert

objectiveTo assess the concordance of Xpert with phenotypic drug susceptibility testing (DST) performed at the supranational reference laboratory and to describe the patterns of drug-resistant TB observed.

designThis was a retrospective descriptive study of laboratory data collected from April 2012 to December 2017.

resultsIn 69 months, 1408 specimens with Xpert results were sent for mycobacterial culture and DST; Mycobacterium tuberculosis was cultured from 63% (884/1408) and DST was completed in 99.4%. The concordance between Xpert and culture for M. tuberculosis detection was 98.6%. Of 760 RR-TB cases, 98.7% were detected using Xpert; 98.5% of 620 MDR-TB cases were identified using phenotypic DST. Phenotypic resistance to second-line drugs was detected in 59.4% (522/879) of specimens tested, including 29 with fluoroquinolone resistance; the majority were from the National Capital District and Daru Island.

conclusionThe high concordance between phenotypic DST and Xpert in identifying RR-TB cases supports the scale-up of initial Xpert testing in settings with high rates of drug resistance. However, rapid DST in addition to the detection of RR-TB is required.

Indexed as

drug susceptibility testingmultidrug-resistant tuberculosisPapua New GuineaXpert® MTB/RIF

Identifiers

PMID31579644
PMCPMC6735453
OpenAlexW2972353534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.