Evidence map›Paper›PMID 31578829›Full record

ArticleMolecular genetics & genomic medicine2020

Exome sequencing study of partial agenesis of the corpus callosum in men with developmental delay, epilepsy, and microcephaly.

Jolyane Meloche, Vanessa Brunet, Pierre-Alexandre Gagnon, Marie-Ève Lavoie, Jean-Benoît Bouchard, Javad Nadaf, Jacek Majewski, Charles Morin, Catherine Laprise

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Regulation of MAPK Signaling Pathways by the Large HERC Ubiquitin Ligases.International journal of molecular sciences · 2023
    Review
  4. The genotype-phenotype correlations of theFrontiers in molecular neuroscience · 2023
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jolyane MelocheCentre intersectoriel en santé durable, Université du Québec à Chicoutimi, Saguenay, QC, Canada.ORCID 0000-0001-5234-2326
Vanessa BrunetDépartement des Sciences Fondamentales, Université du Québec à Chicoutimi, Saguenay, QC, Canada.
Pierre-Alexandre GagnonCentre intersectoriel en santé durable, Université du Québec à Chicoutimi, Saguenay, QC, Canada.
Marie-Ève LavoieCentre intersectoriel en santé durable, Université du Québec à Chicoutimi, Saguenay, QC, Canada.
Jean-Benoît BouchardCentre de Santé et de Services Sociaux de Chicoutimi, Saguenay, QC, Canada.
Javad NadafDepartment of Human Genetics, McGill University and Genome Quebec Innovation Centre, Montreal, QC, Canada.
Jacek MajewskiDepartment of Human Genetics, McGill University and Genome Quebec Innovation Centre, Montreal, QC, Canada.
Charles MorinCentre de Santé et de Services Sociaux de Chicoutimi, Saguenay, QC, Canada.
Catherine LapriseCentre intersectoriel en santé durable, Université du Québec à Chicoutimi, Saguenay, QC, Canada.
Université du Québec à Chicoutimi · CACentre de Santé et de Services Sociaux de Chicoutimi · CAMcGill University and Génome Québec Innovation Centre · CA

Funding

CIHR
6 · The paper itself

Abstract

backgroundThis study reports the genetic features of four Caucasian males from the Saguenay-Lac-St-Jean region affected by partial agenesis of the corpus callosum (ACC) with hypotonia, epilepsy, developmental delay, microcephaly, hypoplasia, and autistic behavior.

methodsWe performed whole exome sequencing (WES) to identify new genes involved in this pathological phenotype. The regions of interest were subsequently sequenced for family members.

resultsSingle-nucleotide variations (SNVs) and insertions or deletions were detected in genes potentially implicated in brain defects observed in these patients. One patient did not have mutations in genes related to ACC, but carried a de novo pathogenic mutation in Mucolipin-1 (MCOLN1) and was diagnosed with mucolipidosis type IV. Among the other probands, missense SNVs were observed in DCLK2 (Doublecortin Like Kinase 2), HERC2 (HECT And RLD Domain Containing E3 Ubiquitin Protein Ligase 2), and KCNH3 (Potassium channel, voltage-gated, subfamily H, member 3). One patient also carried a non-frameshift insertion in CACNA1A (Cav2.1(P/Q-type) calcium channels).

conclusionAlthough no common genetic defect was observed in this study, we provide evidence for new avenues of investigation for ACC, such as molecular pathways involving HERC2, CACNA1A, KCNH3, and more importantly DCLK2. We also allowed to diagnose an individual with mucolipidosis type IV.

Indexed as

ExomePolymorphism, Single NucleotideAdolescentAdultAgenesis of Corpus CallosumCalcium ChannelsCalcium Channels, N-TypeDevelopmental DisabilitiesDoublecortin-Like KinasesEpilepsyEther-A-Go-Go Potassium ChannelsHumansMaleMicrocephalyNerve Tissue ProteinsProtein Serine-Threonine KinasesCACNA1A protein, humanCalcium ChannelsCalcium Channels, N-TypeDCLK2 protein, humanDoublecortin-Like KinasesEther-A-Go-Go Potassium ChannelsHERC2 protein, humanKCNH3 protein, humanMCOLN1 protein, humanNerve Tissue ProteinsProtein Serine-Threonine KinasesTransient Receptor Potential ChannelsUbiquitin-Protein Ligasesagenesis of the corpus callosumDCLK2exome sequencinggenetics

Identifiers

PMID31578829
PMCPMC6978259
OpenAlexW2977930626

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.