Evidence map›Paper›PMID 31578340›Full record

ArticleScientific reports2019

New Male Specific Markers for Hop and Application in Breeding Program.

Andreja Čerenak, Zala Kolenc, Petra Sehur, Simon P Whittock, Anthony Koutoulis, Ron Beatson, Emily Buck, Branka Javornik, Suzana Škof, Jernej Jakše

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Andreja ČerenakSlovenian Institute of Hop Research and Brewing, Cesta Žalskega tabora 2, 3310, Žalec, Slovenia. andreja.cerenak@ihps.si.ORCID http://orcid.org/0000-0002-6817-1741
Zala KolencSlovenian Institute of Hop Research and Brewing, Cesta Žalskega tabora 2, 3310, Žalec, Slovenia.
Petra SehurSlovenian Institute of Hop Research and Brewing, Cesta Žalskega tabora 2, 3310, Žalec, Slovenia.
Simon P WhittockHop Products Australia, 446 Elizabeth Street Hobart, Tasmania & School of Natural Sciences, University of Tasmania, Private Bag 55, Hobart, Tasmania, Australia.ORCID http://orcid.org/0000-0001-8586-231X
Anthony KoutoulisUniversity of Tasmania, School of Natural Sciences, Private Bag 55, Hobart, TAS, 7001, Australia.ORCID http://orcid.org/0000-0001-8846-4456
Ron BeatsonThe New Zealand Institute for Plant & Food Research Limited, Palmerston North Research Centre, Private Bag 11600, Palmerston North, 4442, New Zealand.ORCID http://orcid.org/0000-0002-8807-798X
Emily BuckThe New Zealand Institute for Plant & Food Research Limited, Palmerston North Research Centre, Private Bag 11600, Palmerston North, 4442, New Zealand.ORCID http://orcid.org/0000-0002-3292-1694
Branka JavornikUniversity of Ljubljana, Biotechnical Faculty, Agronomy Department, Jamnikarjeva 101, 1000, Ljubljana, Slovenia.
Suzana ŠkofUniversity of Ljubljana, Biotechnical Faculty, Agronomy Department, Jamnikarjeva 101, 1000, Ljubljana, Slovenia.
Jernej JakšeUniversity of Ljubljana, Biotechnical Faculty, Agronomy Department, Jamnikarjeva 101, 1000, Ljubljana, Slovenia.ORCID http://orcid.org/0000-0002-8907-1627
Slovenian Institute of Hop Research and Brewing · SIUniversity of Ljubljana · SIPlant & Food Research · NZUniversity of Tasmania · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Male specific DNA sequences were selected from a Diversity Arrays Technology (DArT) mapping study to evaluate their suitability for determination of the sex phenotype among young seedlings in a hop (Humulus lupulus L.) breeding program. Ten male specific DArT markers showed complete linkage with male sex phenotype in three crossing families. Following optimization, four were successfully converted into PCR markers and a multiplex PCR approach for their use was developed. Among 197 plants (97 from the world collection; 100 from three segregating families), 94-100% positive correlation with sex phenotypic data was achieved for the single PCR amplification, whereas the multiplex approach showed 100% correlation. To develop a fast and low-cost method, crude sample multiplex PCR was evaluated in 253 progenies from 14 segregating populations without losing accuracy. The study describes, for the first time, the routine application of molecular markers linked to male sex in an intensive Slovenian hop breeding program. The methods described could be employed for screening of sex at the seedling stage in other hop programs worldwide, thereby saving resources for desirable female plants.

Indexed as

Genetic MarkersPlant BreedingContig MappingDNA, ChloroplastDNA, PlantHumulusMultiplex Polymerase Chain ReactionPhenotypeSeedlingsSloveniaDNA, ChloroplastDNA, PlantGenetic Markers

Identifiers

PMID31578340
PMCPMC6775077
OpenAlexW2977727208

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.