Evidence map›Paper›PMID 31578255›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Capsid expansion of bacteriophage T5 revealed by high resolution cryoelectron microscopy.

Alexis Huet, Robert L Duda, Pascale Boulanger, James F Conway

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 38 citations in OpenAlex.

  1. Novel LyticViruses · 2026
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  17. A Capsid Structure ofViruses · 2022
    Article
  18. Article
  19. Article
  20. Capsid Structure ofJournal of virology · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Alexis HuetDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260.
Robert L DudaDepartment of Biological Sciences, University of Pittsburgh Dietrich School of Arts & Sciences, Pittsburgh, PA 15260.ORCID 0000-0002-9517-2731
Pascale BoulangerInstitute for Integrative Biology of the Cell (I2BC), CEA-CNRS-Université Paris Sud-Université́ Paris-Saclay, 91198 Gif-sur-Yvette, France.
James F ConwayDepartment of Structural Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA 15260; jxc100@pitt.edu.ORCID 0000-0002-6581-4748
University of Pittsburgh · USUniversité Paris-Sud · FR

Funding

ASSEMBLY AND STRUCTURE OF BACTERIOPHAGE LAMBDAR01GM047795 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DUDA, ROBERT LOUIS · 1991 to 2017
$7.8M
Direct electron detecting (DED) cameraS10OD019995 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CONWAY, JAMES F. · 2015 to 2015
$548k
NIGMS NIH HHS R01 GM047795NIH HHS S10 OD019995
6 · The paper itself

Abstract

The large (90-nm) icosahedral capsid of bacteriophage T5 is composed of 775 copies of the major capsid protein (mcp) together with portal, protease, and decoration proteins. Its assembly is a regulated process that involves several intermediates, including a thick-walled round precursor prohead that expands as the viral DNA is packaged to yield a thin-walled and angular mature capsid. We investigated capsid maturation by comparing cryoelectron microscopy (cryo-EM) structures of the prohead, the empty expanded capsid both with and without decoration protein, and the virion capsid at a resolution of 3.8 Å for the latter. We detail the molecular structure of the mcp, its complex pattern of interactions, and their evolution during maturation. The bacteriophage T5 mcp is a variant of the canonical HK97-fold with a high level of plasticity that allows for the precise assembly of a giant macromolecule and the adaptability needed to interact with other proteins and the packaged DNA.

Indexed as

bacteriophagecapsidconformational changecryoelectron microscopy

Identifiers

PMID31578255
PMCPMC6800373
OpenAlexW2978126485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.