Evidence map›Paper›PMID 31576635›Full record

ArticleProtein science : a publication of the Protein Society2020

SASBDB: Towards an automatically curated and validated repository for biological scattering data.

Alexey G Kikhney, Clemente R Borges, Dmitry S Molodenskiy, Cy M Jeffries, Dmitri I Svergun

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 174 papers.

0numbers the graph read from it
0cells of the map it votes in
174citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

174 citing papers in PubMed.

  1. The BioSAXS laboratory of the ITACA.SB Research Infrastructure.Journal of applied crystallography · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. AF-CALVADOS: AlphaFold-guided simulations of multi-domain proteins at the proteome level.Protein science : a publication of the Protein Society · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. The role of kinase domain dimerization in EGFR activation.Structure (London, England : 1993) · 2026
    Article

114 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alexey G KikhneyEuropean Molecular Biology Laboratory, Hamburg Outstation, Hamburg, Germany.ORCID 0000-0003-1321-3956
Clemente R BorgesEuropean Molecular Biology Laboratory, Hamburg Outstation, Hamburg, Germany.
Dmitry S MolodenskiyEuropean Molecular Biology Laboratory, Hamburg Outstation, Hamburg, Germany.ORCID 0000-0002-5954-4294
Cy M JeffriesEuropean Molecular Biology Laboratory, Hamburg Outstation, Hamburg, Germany.
Dmitri I SvergunEuropean Molecular Biology Laboratory, Hamburg Outstation, Hamburg, Germany.ORCID 0000-0003-0830-5696

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Small-angle scattering (SAS) of X-rays and neutrons is a fundamental tool to study the nanostructural properties, and in particular, biological macromolecules in solution. In structural biology, SAS recently transformed from a specialization into a general technique leading to a dramatic increase in the number of publications reporting structural models. The growing amount of data recorded and published has led to an urgent need for a global SAS repository that includes both primary data and models. In response to this, a small-angle scattering biological data bank (SASBDB) was designed in 2014 and is available for public access at www.sasbdb.org. SASBDB is a comprehensive, free and searchable repository of SAS experimental data and models deposited together with the relevant experimental conditions, sample details and instrument characteristics. SASBDB is rapidly growing, and presently has over 1,000 entries containing more than 1,600 models. We describe here the overall organization and procedures of SASBDB paying most attention to user-relevant information during submission. Perspectives of further developments, in particular, with OneDep system of the Protein Data Bank, and also widening of SASBDB including new types of data/models are discussed.

Indexed as

Databases, FactualData CurationMacromolecular SubstancesModels, MolecularProteinsScattering, Small AngleUser-Computer InterfaceX-Ray DiffractionMacromolecular SubstancesProteins

Identifiers

PMID31576635
PMCPMC6933840

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.