Evidence map›Paper›PMID 31576624›Full record

ArticleJournal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie2020

Genome-wide association for milk production and lactation curve parameters in Holstein dairy cows.

Hadi Atashi, Mazdak Salavati, Jenne De Koster, Jim Ehrlich, Mark Crowe, Geert Opsomer, GplusE consortium, Miel Hostens

Abstract read
In one paragraph

Article in Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Hadi AtashiDepartment of Reproduction, Obstetrics and Herd Health, Ghent University, Merelbeke, Belgium.ORCID https://orcid.org/0000-0002-6853-6608
Mazdak SalavatiThe Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, UK.
Jenne De KosterDepartment of Reproduction, Obstetrics and Herd Health, Ghent University, Merelbeke, Belgium.
Jim EhrlichDairy Veterinarians Group, Argyle, New York.
Mark CroweUniversity College Dublin, Dublin, Ireland.
Geert OpsomerDepartment of Reproduction, Obstetrics and Herd Health, Ghent University, Merelbeke, Belgium.
GplusE consortium
Miel HostensDepartment of Reproduction, Obstetrics and Herd Health, Ghent University, Merelbeke, Belgium.ORCID https://orcid.org/0000-0001-5376-976X

Funding

European Union's Seventh Framework Program 613689
6 · The paper itself

Abstract

The aim of this study was to identify genomic regions associated with 305-day milk yield and lactation curve parameters on primiparous (n = 9,910) and multiparous (n = 11,158) Holstein cows. The SNP solutions were estimated using a weighted single-step genomic BLUP approach and imputed high-density panel (777k) genotypes. The proportion of genetic variance explained by windows of 50 consecutive SNP (with an average of 165 Kb) was calculated, and regions that accounted for more than 0.50% of the variance were used to search for candidate genes. Estimated heritabilities were 0.37, 0.34, 0.17, 0.12, 0.30 and 0.19, respectively, for 305-day milk yield, peak yield, peak time, ramp, scale and decay for primiparous cows. Genetic correlations of 305-day milk yield with peak yield, peak time, ramp, scale and decay in primiparous cows were 0.99, 0.63, 0.20, 0.97 and -0.52, respectively. The results identified three windows on BTA14 associated with 305-day milk yield and the parameters of lactation curve in primi- and multiparous cows. Previously proposed candidate genes for milk yield supported by this work include GRINA, CYHR1, FOXH1, TONSL, PPP1R16A, ARHGAP39, MAF1, OPLAH and MROH1, whereas newly identified candidate genes are MIR2308, ZNF7, ZNF34, SLURP1, MAFA and KIFC2 (BTA14). The protein lipidation biological process term, which plays a key role in controlling protein localization and function, was identified as the most important term enriched by the identified genes.

Indexed as

Genome-Wide Association StudyMilkAnimalsCattleDairyingFemaleGenomeGenotypeLactationParityPhenotypePolymorphism, Single NucleotidePregnancygenome-wide association studyHolsteinlactation curvemilk yield

Identifiers

PMID31576624
PMCPMC7217222

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.