Evidence map›Paper›PMID 31575878›Full record

ArticleScientific reports2019

Classes of non-conventional tetraspanins defined by alternative splicing.

Nikolas Hochheimer, Ricarda Sies, Anna C Aschenbrenner, Dirk Schneider, Thorsten Lang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

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  12. Review
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  15. Tetraspanins in the regulation of mast cell function.Medical microbiology and immunology · 2020
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Nikolas HochheimerDepartment of Membrane Biochemistry, Life & Medical Sciences Institute (LIMES), University of Bonn, Carl-Troll-Straße 31, 53115, Bonn, Germany.
Ricarda SiesDepartment of Membrane Biochemistry, Life & Medical Sciences Institute (LIMES), University of Bonn, Carl-Troll-Straße 31, 53115, Bonn, Germany.
Anna C AschenbrennerDepartment of Genomics and Immunoregulation, Life & Medical Sciences Institute (LIMES), University of Bonn, Carl-Troll-Straße 31, 53115, Bonn, Germany.ORCID http://orcid.org/0000-0002-9429-5457
Dirk SchneiderInstitute of Pharmacy and Biochemistry, Johannes Gutenberg University Mainz, Johann-Joachim-Becher-Weg 30, 55128, Mainz, Germany.
Thorsten LangDepartment of Membrane Biochemistry, Life & Medical Sciences Institute (LIMES), University of Bonn, Carl-Troll-Straße 31, 53115, Bonn, Germany. thorsten.lang@uni-bonn.de.
University of Bonn · DEJohannes Gutenberg University Mainz · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tetraspanins emerge as a family of membrane proteins mediating an exceptional broad diversity of functions. The naming refers to their four transmembrane segments, which define the tetraspanins' typical membrane topology. In this study, we analyzed alternative splicing of tetraspanins. Besides isoforms with four transmembrane segments, most mRNA sequences are coding for isoforms with one, two or three transmembrane segments, representing structurally mono-, di- and trispanins. Moreover, alternative splicing may alter transmembrane topology, delete parts of the large extracellular loop, or generate alternative N- or C-termini. As a result, we define structure-based classes of non-conventional tetraspanins. The increase in gene products by alternative splicing is associated with an unexpected high structural variability of tetraspanins. We speculate that non-conventional tetraspanins have roles in regulating ER exit and modulating tetraspanin-enriched microdomain function.

Indexed as

Alternative SplicingEndoplasmic ReticulumHumansIsomerismMembrane ProteinsProteomicsStructure-Activity RelationshipTetraspaninsMembrane ProteinsTetraspanins

Identifiers

PMID31575878
PMCPMC6773723
OpenAlexW2978303377

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.