Evidence map›Paper›PMID 31575347›Full record

ArticleJournal of the Royal Society, Interface2019

Influence of image segmentation on one-dimensional fluid dynamics predictions in the mouse pulmonary arteries.

Mitchel J Colebank, L Mihaela Paun, M Umar Qureshi, Naomi Chesler, Dirk Husmeier, Mette S Olufsen, Laura Ellwein Fix

Open access · greenAbstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 24 citations in OpenAlex.

  1. A One-Dimensional (1D) Computational Fluid Dynamics Study of Fontan-Associated Liver Disease (FALD).International journal for numerical methods in biomedical engineering · 2026
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  6. A computational study of aortic reconstruction in single ventricle patients.Biomechanics and modeling in mechanobiology · 2023
    Article
  7. Article
  8. A multiscale model of vascular function in chronic thromboembolic pulmonary hypertension.American journal of physiology. Heart and circulatory physiology · 2021
    Article
  9. Article
  10. Article
  11. Image-based scaling laws for somatic growth and pulmonary artery morphometry from infancy to adulthood.American journal of physiology. Heart and circulatory physiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Mitchel J ColebankMathematics, NC State University, Raleigh, NC 27695, USA.
L Mihaela PaunMathematics and Statistics, University of Glasgow, Glasgow G12 8SQ, UK.
M Umar QureshiMathematics, NC State University, Raleigh, NC 27695, USA.
Naomi CheslerBiomedical Engineering, University of Wisconsin-Madison, Madison, WI 53706, USA.
Dirk HusmeierMathematics and Statistics, University of Glasgow, Glasgow G12 8SQ, UK.
Mette S OlufsenMathematics, NC State University, Raleigh, NC 27695, USA.
Laura Ellwein FixMathematics and Applied Mathematics, Virginia Commonwealth University, Richmond, VA 23220, USA.
North Carolina State University · USUniversity of Glasgow · GBUniversity of Wisconsin–Madison · USVirginia Commonwealth University · US

Funding

Vascular collagen accumulation & mechanical mechanisms in pulmonary hypertensionR01HL086939 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI CHESLER, NAOMI C · 2007 to 2016
$3.6M
American Heart Association-American Stroke Association 19PRE34380459NHLBI NIH HHS R01 HL086939
6 · The paper itself

Abstract

Computational fluid dynamics (CFD) models are emerging tools for assisting in diagnostic assessment of cardiovascular disease. Recent advances in image segmentation have made subject-specific modelling of the cardiovascular system a feasible task, which is particularly important in the case of pulmonary hypertension, requiring a combination of invasive and non-invasive procedures for diagnosis. Uncertainty in image segmentation propagates to CFD model predictions, making the quantification of segmentation-induced uncertainty crucial for subject-specific models. This study quantifies the variability of one-dimensional CFD predictions by propagating the uncertainty of network geometry and connectivity to blood pressure and flow predictions. We analyse multiple segmentations of a single, excised mouse lung using different pre-segmentation parameters. A custom algorithm extracts vessel length, vessel radii and network connectivity for each segmented pulmonary network. Probability density functions are computed for vessel radius and length and then sampled to propagate uncertainties to haemodynamic predictions in a fixed network. In addition, we compute the uncertainty of model predictions to changes in network size and connectivity. Results show that variation in network connectivity is a larger contributor to haemodynamic uncertainty than vessel radius and length.

Indexed as

AlgorithmsComputer SimulationHemodynamicsHypertension, PulmonaryModels, CardiovascularPulmonary ArteryX-Ray MicrotomographyAnimalsMaleMicefluid dynamicshaemodynamicsimage segmentationpulmonary circulationuncertainty quantification

Identifiers

PMID31575347
PMCPMC6833336
OpenAlexW2945275599

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.