Evidence map›Paper›PMID 31574667›Full record

ArticlePhysical review. E2019

Critical slowing down in biochemical networks with feedback.

Tommy A Byrd, Amir Erez, Robert M Vogel, Curtis Peterson, Michael Vennettilli, Grégoire Altan-Bonnet, Andrew Mugler

Abstract read
In one paragraph

Article in Physical review. E, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Early warning signals for loss of control in complex systems.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Apparent Power Laws Can Occur without Criticality.Entropy (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tommy A ByrdDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA.
Amir ErezDepartment of Molecular Biology, Princeton University, Princeton, New Jersey 08544, USA.
Robert M VogelIBM T. J. Watson Research Center, Yorktown Heights, New York 10598, USA.
Curtis PetersonDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA.
Michael VennettilliDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA.
Grégoire Altan-BonnetImmunodynamics Group, Cancer and Inflammation Program, National Cancer Institute, National Institutes of Health, Bethesda, Maryland 20814, USA.
Andrew MuglerDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, USA.

Funding

Thermally robust chemotaxis and thermotaxis in Escherichia coliR01GM082938 · NIGMS · PRINCETON UNIVERSITY · PI WINGREEN, NED S · 2008 to 2025
$5.5M
Immunophenotyping by high-dimensional cytometry and machine learningZIABC011807 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ALTAN-BONNET, GRÉGOIRE · 2018 to 2025
$3.6M
Quantitative modeling of the phenotypic variability of individual T cells and theR01AI083408 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI ALTAN-BONNET, GREGOIRE · 2009 to 2012
$1.9M
Intramural NIH HHS ZIA BC011807NIAID NIH HHS R01 AI083408NIGMS NIH HHS R01 GM082938
6 · The paper itself

Abstract

Near a bifurcation point, the response time of a system is expected to diverge due to the phenomenon of critical slowing down. We investigate critical slowing down in well-mixed stochastic models of biochemical feedback by exploiting a mapping to the mean-field Ising universality class. We analyze the responses to a sudden quench and to continuous driving in the model parameters. In the latter case, we demonstrate that our class of models exhibits the Kibble-Zurek collapse, which predicts the scaling of hysteresis in cellular responses to gradual perturbations. We discuss the implications of our results in terms of the tradeoff between a precise and a fast response. Finally, we use our mapping to quantify critical slowing down in T cells, where the addition of a drug is equivalent to a sudden quench in parameter space.

Indexed as

Feedback, PhysiologicalModels, BiologicalKinetics

Identifiers

PMID31574667
PMCPMC8499154

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.