Evidence map›Paper›PMID 31574300›Full record

ArticleAlcohol (Fayetteville, N.Y.)2020

Validation of an alcohol misuse classifier in hospitalized patients.

Daniel To, Brihat Sharma, Niranjan Karnik, Cara Joyce, Dmitriy Dligach, Majid Afshar

Open access · greenAbstract readValidation Study
In one paragraph

Article in Alcohol (Fayetteville, N.Y.), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 2 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 2 syntheses or guidelines pooled it, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Daniel ToStritch School of Medicine, Loyola University Chicago, Maywood, IL, USA.
Brihat SharmaDepartment of Computer Science, Loyola University Chicago, Chicago, IL, USA.
Niranjan KarnikDepartment of Psychiatry & Behavioral Sciences, Rush Medical College, Rush University, Chicago, IL, USA.
Cara JoyceStritch School of Medicine, Loyola University Chicago, Maywood, IL, USA; Department of Public Health Sciences, Loyola University Chicago, Maywood, IL, USA; Center for Health Outcomes and Informatics Research, Loyola University Chicago, Maywood, IL, USA.
Dmitriy DligachDepartment of Computer Science, Loyola University Chicago, Chicago, IL, USA; Department of Public Health Sciences, Loyola University Chicago, Maywood, IL, USA; Center for Health Outcomes and Informatics Research, Loyola University Chicago, Maywood, IL, USA.
Majid AfsharStritch School of Medicine, Loyola University Chicago, Maywood, IL, USA; Department of Public Health Sciences, Loyola University Chicago, Maywood, IL, USA; Center for Health Outcomes and Informatics Research, Loyola University Chicago, Maywood, IL, USA. Electronic address: majid.afshar@lumc.edu.
Loyola University Chicago · USRush University · US

Funding

The Institute for Translational MedicineUL1TR002389 · NCATS · UNIVERSITY OF CHICAGO · PI Joshua J Jacobs, DAVID O MELTZER · 2017 to 2026
$71.6M
Quantifying How Cocaine Users Respond to Fentanyl Contamination in CocaineUG1DA049467 · NIDA · UNIVERSITY OF ILLINOIS AT CHICAGO · PI Niranjan Subhash Karnik, ANTONIO A MORGAN-LOPEZ · 2019 to 2026
$11.2M
Temporal relation discovery for clinical textR01LM010090 · NLM · BOSTON CHILDREN'S HOSPITAL · PI MARTIN, JAMES H., SAVOVA, GUERGANA K. · 2010 to 2022
$7.1M
Learning Universal Patient Representations with Hierarchical TransformersR01LM012973 · NLM · BOSTON CHILDREN'S HOSPITAL · PI Timothy A Miller · 2019 to 2026
$3.5M
Employing eSBI in a Community-based HIV Testing Environment for At-risk YouthR01DA041071 · NIDA · LURIE CHILDREN'S HOSPITAL OF CHICAGO · PI GAROFALO, ROBERT, KARNIK, NIRANJAN SUBHASH · 2015 to 2019
$3.2M
CHANGE OF GRANTEE INSTITUTION 1 K23 AA024503 Alcohol, Burn-Injury, and Acute Respiratory Distress SyndromeK23AA024503 · NIAAA · UNIVERSITY OF WISCONSIN-MADISON · PI AFSHAR, MAJID · 2016 to 2020
$948k
NCATS NIH HHS UL1 TR002389NIAAA NIH HHS K23 AA024503NIDA NIH HHS R01 DA041071NIDA NIH HHS UG1 DA049467NLM NIH HHS R01 LM010090NLM NIH HHS R01 LM012973
6 · The paper itself

Abstract

backgroundCurrent modes of identifying alcohol misuse in hospitalized patients rely on self-report questionnaires and diagnostic codes that have limitations, including low sensitivity. Information in the clinical notes of the electronic health record (EHR) may further augment the identification of alcohol misuse. Natural language processing (NLP) with supervised machine learning has been successful at analyzing clinical notes and identifying cases of alcohol misuse in trauma patients.

methodsAn alcohol misuse NLP classifier, previously developed on trauma patients who completed the Alcohol Use Disorders Identification Test, was validated in a cohort of 1000 hospitalized patients at a large, tertiary health system between January 1, 2007 and September 1, 2017. The clinical notes were processed using the clinical Text Analysis and Knowledge Extraction System. The National Institute on Alcohol Abuse and Alcoholism (NIAAA) guidelines for alcohol misuse were used during annotation of the medical records in our validation dataset.

resultsThe alcohol misuse classifier had an area under the receiver operating characteristic curve of 0.91 (95% CI 0.90-0.93) in the cohort of hospitalized patients. The sensitivity, specificity, positive predictive value, and negative predictive value were 0.88 (95% CI 0.85-0.90), 0.78 (95% CI 0.74-0.82), 0.85 (95% CI 0.82-0.87), and 0.82 (95% CI 0.78-0.86), respectively. The Hosmer-Lemeshow Test (p = 0.13) demonstrates good model fit. Additionally, there was a dose-dependent response in alcohol consumption behaviors across increasing strata of predicted probabilities for alcohol misuse.

conclusionThe alcohol misuse NLP classifier had good discrimination and test characteristics in hospitalized patients. An approach using the clinical notes with NLP and supervised machine learning may better identify alcohol misuse cases than conventional methods solely relying on billing diagnostic codes.

Indexed as

Electronic Health RecordsInpatientsNatural Language ProcessingSupervised Machine LearningAdultAlcoholismCase-Control StudiesFemaleHumansMaleMiddle AgedReproducibility of ResultsSensitivity and SpecificityTertiary Care Centersalcohol use disorderethanolmachine learningnatural language processingpredictive value of tests

Identifiers

PMID31574300
PMCPMC7101259
OpenAlexW2975062478

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.