Evidence map›Paper›PMID 31574080›Full record

ArticlePLoS biology2019

Combinatorial mutagenesis of rapidly evolving residues yields super-restrictor antiviral proteins.

Rossana Colón-Thillet, Emily Hsieh, Laura Graf, Richard N McLaughlin, Janet M Young, Georg Kochs, Michael Emerman, Harmit S Malik

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. The potential impacts of human genetics on virus emergence.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Rossana Colón-ThilletDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Emily HsiehDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Laura GrafInstitute of Virology, Medical Center-University of Freiburg, Freiburg, Germany.
Richard N McLaughlinDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0003-0950-2253
Janet M YoungDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0001-8220-8427
Georg KochsInstitute of Virology, Medical Center-University of Freiburg, Freiburg, Germany.ORCID 0000-0003-0187-559X
Michael EmermanDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0002-4181-6335
Harmit S MalikDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.ORCID 0000-0001-6005-0016
Fred Hutch Cancer Center · USUniversity of Freiburg · DEUniversity of Washington · USHoward Hughes Medical Institute · USPacific Northwest Diabetes Research Institute · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
X-ray Screening and Rapid Structure DeterminationP50AI150476 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI EMERMAN, MICHAEL · 2019 to 2021
$14.4M
VPR AND HIV INFECTIONR01AI030927 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI EMERMAN, MICHAEL · 1991 to 2020
$5.3M
Causes and human health consequences of the evolution of retroelements and host restriction factorsR00GM112941 · NIGMS · PACIFIC NORTHWEST RESEARCH INSTITUTE · PI MCLAUGHLIN, RICHARD NOEL · 2018 to 2020
$747k
Causes and human health consequences of the evolution of retroelements and host restriction factorsK99GM112941 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MCLAUGHLIN, RICHARD NOEL · 2015 to 2016
$180k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA015704NIAID NIH HHS P50 AI150476NIAID NIH HHS R01 AI030927NIGMS NIH HHS K99 GM112941NIGMS NIH HHS P50 GM082250NIGMS NIH HHS R00 GM112941NIGMS NIH HHS T32 GM007270
6 · The paper itself

Abstract

Antagonistic interactions drive host-virus evolutionary arms races, which often manifest as recurrent amino acid changes (i.e., positive selection) at their protein-protein interaction interfaces. Here, we investigated whether combinatorial mutagenesis of positions under positive selection in a host antiviral protein could enhance its restrictive properties. We tested approximately 700 variants of human MxA, generated by combinatorial mutagenesis, for their ability to restrict Thogotovirus (THOV). We identified MxA super-restrictors with increased binding to the THOV nucleoprotein (NP) target protein and 10-fold higher anti-THOV restriction relative to wild-type human MxA, the most potent naturally occurring anti-THOV restrictor identified. Our findings reveal a means to elicit super-restrictor antiviral proteins by leveraging signatures of positive selection. Although some MxA super-restrictors of THOV were impaired in their restriction of H5N1 influenza A virus (IAV), other super-restrictor variants increased THOV restriction without impairment of IAV restriction. Thus, broadly acting antiviral proteins such as MxA mitigate breadth-versus-specificity trade-offs that could otherwise constrain their adaptive landscape.

Indexed as

Amino Acid MotifsCell Line, TumorEvolution, MolecularGene Expression RegulationGene LibraryHEK293 CellsHepatocytesHost SpecificityHumansInfluenza A Virus, H5N1 SubtypeMutagenesisMyxovirus Resistance ProteinsNucleoproteinsSignal TransductionThogotovirusViral ProteinsMX1 protein, humanMyxovirus Resistance ProteinsNucleoproteinsViral Proteins

Identifiers

PMID31574080
PMCPMC6772013
OpenAlexW2978782758

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.