ArticleEnvironmental microbiology2019
Genome-resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep-sea hydrothermal vents.
Article in Environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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Who cites it
36 citing papers in PubMed.
- Diverse biosynthetic pathways in Arctic hydrothermal biofilms.Nature communications · 2026Article
- Integrated omics analyses reveal insights into microbial dark matter associated with deep-sea water in Central Indian Ocean.World journal of microbiology & biotechnology · 2026Article
- Intestinal organoid screen reveals that Bacillus velezensis PGM541 promotes epithelial proliferation via its metabolite butyric acid.Microbiome · 2026Article
- Multi-domain temporal patterns reveal stable community membership but dynamic interactions in the coastal microbiome.Environmental microbiome · 2025Article
- Metabolic and population profiles of active subseafloor autotrophs in young oceanic crust at deep-sea hydrothermal vents.Applied and environmental microbiology · 2025Article
- Elevated heterotrophic activity in Guaymas Basin hydrothermal plumes influences deep-sea carbon cycling.Nature communications · 2025Article
- Molecular piracy in deep-sea hydrothermal vent: phage-plasmid interactions revealed by phage-FISH inApplied and environmental microbiology · 2025Article
- A Globally Distributed Cyanobacterial Nitroreductase Capable of Conferring Biodegradation of Chloramphenicol.Research (Washington, D.C.) · 2025Article
- How river drying influences greenhouse gas emissions: insights from species and gene shifts.ISME communications · 2025Article
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- Implementation of multiomic mass spectrometry approaches for the evaluation of human health following environmental exposure.Molecular omics · 2024Review
- BASALT refines binning from metagenomic data and increases resolution of genome-resolved metagenomic analysis.Nature communications · 2024Article
- Article
- Sulfur cycling connects microbiomes and biogeochemistry in deep-sea hydrothermal plumes.The ISME journal · 2023Article
- Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing.Microbiology spectrum · 2023Article
- Trait biases in microbial reference genomes.Scientific data · 2023Article
- Global patterns of diversity and metabolism of microbial communities in deep-sea hydrothermal vent deposits.Microbiome · 2022Article
- Article
- Article
- Genome-centric insight into metabolically active microbial population in shallow-sea hydrothermal vents.Microbiome · 2022Article
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4 authors.
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Abstract
The structure and function of microbial communities inhabiting the subseafloor near hydrothermal systems are influenced by fluid geochemistry, geologic setting and fluid flux between vent sites, as well as biological interactions. Here, we used genome-resolved metagenomics and metatranscriptomics to examine patterns of gene abundance and expression and assess potential niche differentiation in microbial communities in venting fluids from hydrothermal vent sites at the Mid-Cayman Rise. We observed similar patterns in gene and transcript abundance between two geochemically distinct vent fields at the community level but found that each vent site harbours a distinct microbial community with differing transcript abundances for individual microbial populations. Through an analysis of metabolic pathways in 64 metagenome-assembled genomes (MAGs), we show that MAG transcript abundance can be tied to differences in metabolic pathways and to potential metabolic interactions between microbial populations, allowing for niche-partitioning and divergence in both population distribution and activity. Our results illustrate that most microbial populations have a restricted distribution within the seafloor, and that the activity of those microbial populations is tied to both genome content and abiotic factors.
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