Evidence map›Paper›PMID 31572362›Full record

Trial reportFrontiers in immunology2019

Non-parametric Heat Map Representation of Flow Cytometry Data: Identifying Cellular Changes Associated With Genetic Immunodeficiency Disorders.

Julia I Ellyard, Robert Tunningley, Ayla May Lorenzo, Simon H Jiang, Amelia Cook, Rochna Chand, Dipti Talaulikar, Ann-Maree Hatch, Anastasia Wilson, Carola G Vinuesa and 2 more

Open access · goldAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in Frontiers in immunology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Julia I EllyardDepartment of Immunology and Infectious Diseases, Australian National University, Canberra, ACT, Australia.
Robert TunningleyDepartment of Immunology and Infectious Diseases, Australian National University, Canberra, ACT, Australia.
Ayla May LorenzoDepartment of Immunology and Infectious Diseases, Australian National University, Canberra, ACT, Australia.
Simon H JiangDepartment of Immunology and Infectious Diseases, Australian National University, Canberra, ACT, Australia.
Amelia CookDepartment of Immunology and Infectious Diseases, Australian National University, Canberra, ACT, Australia.
Rochna ChandDepartment of Immunology and Infectious Diseases, Australian National University, Canberra, ACT, Australia.
Dipti TalaulikarDepartment of Hematology, The Canberra Hospital, Canberra, ACT, Australia.
Ann-Maree HatchCentre for Personalised Immunology, John Curtin School of Medical Research, Australian National University, Canberra, ACT, Australia.
Anastasia WilsonCentre for Personalised Immunology, John Curtin School of Medical Research, Australian National University, Canberra, ACT, Australia.
Carola G VinuesaDepartment of Immunology and Infectious Diseases, Australian National University, Canberra, ACT, Australia.
Matthew C CookDepartment of Immunology and Infectious Diseases, Australian National University, Canberra, ACT, Australia.
David A FulcherDepartment of Immunology and Infectious Diseases, Australian National University, Canberra, ACT, Australia.
Australian National University · AUCanberra Hospital · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genetic primary immunodeficiency diseases are increasingly recognized, with pathogenic mutations changing the composition of circulating leukocyte subsets measured by flow cytometry (FCM). Discerning changes in multiple subpopulations is challenging, and subtle trends might be missed if traditional reference ranges derived from a control population are applied. We developed an algorithm where centiles were allocated using non-parametric comparison to controls, generating multiparameter heat maps to simultaneously represent all leukocyte subpopulations for inspection of trends within a cohort or segregation with a putative genetic mutation. To illustrate this method, we analyzed patients with Primary Antibody Deficiency (PAD) and kindreds harboring mutations in

Indexed as

Flow CytometryHot TemperatureMutationAdultAgedB-LymphocytesCD8-Positive T-LymphocytesFemaleGenetic Diseases, InbornHumansImmunologic Deficiency SyndromesImmunologic MemoryMaleMiddle AgedT-Lymphocytes, Helper-InducerCARD11common variable immunodeficiencyCTLA4flow cytometryimmunodeficiencyTACITNFSF13B

Identifiers

PMID31572362
PMCPMC6749093
OpenAlexW2970054010

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.