Evidence map›Paper›PMID 31570969›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2020

Early transcriptional responses to soybean cyst nematode HG Type 0 show genetic differences among resistant and susceptible soybeans.

Esmaeil Miraeiz, Usawadee Chaiprom, Alireza Afsharifar, Akbar Karegar, Jenny M Drnevich, Matthew E Hudson

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Soybean-SCN Battle: Novel Insight into Soybean's Defense Strategies againstInternational journal of molecular sciences · 2023
    Article
  7. Article
  8. Article
  9. Deciphering the genetic basis of resistance to soybean cyst nematode combining IBD and association mapping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Soybean miR159International journal of molecular sciences · 2021
    Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Esmaeil Miraeiz *Department of Plant Protection, School of Agriculture, Shiraz University, Shiraz, Iran.
Usawadee Chaiprom *PhD Program in Informatics, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Alireza AfsharifarPlant Virology Research Center, School of Agriculture, Shiraz University, Shiraz, Iran.
Akbar KaregarDepartment of Plant Protection, School of Agriculture, Shiraz University, Shiraz, Iran.
Jenny M DrnevichHigh Performance Biological Computing (HPCBio), Roy J. Carver Biotechnology Center, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
Matthew E HudsonDepartment of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, USA. mhudson@illinois.edu.ORCID http://orcid.org/0000-0002-4737-0936

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageRoot transcriptome profiling of three soybean cultivars and a wild relative infected with soybean cyst nematode at migratory phase revealed differential resistance pathway responses between resistant and susceptible genotypes. The soybean cyst nematode (SCN), Heterodera glycines, is the most serious pathogen of soybean production throughout the world. Using resistant cultivars is the primary management strategy against SCN infestation. To gain insight into the still obscure mechanisms of genetic resistance to nematodes in different soybean genotypes, RNA-Seq profiling of the roots of Glycine max cv. Peking, Fayette, Williams 82, and a wild relative (Glycine soja PI 468916) was performed during SCN infection at the migratory phase. The analysis showed statistically significant changes of expression beginning at eight hours after inoculation in genes associated with defense mechanisms and pathways, such as the phenylpropanoid biosynthesis pathway, plant innate immunity and hormone signaling. Our results indicate the importance of the early plant response to migratory phase nematodes in pathogenicity determination. The transcriptome changes occurring during early SCN infection included a number of genes and pathways specific to the different resistant genotypes. We observed the most extensive resistant transcriptome reaction in PI 468916, where the resistant response was qualitatively different from that of commonly used G. max varieties.

Indexed as

Gene Expression Regulation, PlantTranscription, GeneticAnimalsBiosynthetic PathwaysChromosome MappingDisease ResistanceDisease SusceptibilityEthylenesGene Expression ProfilingGene OntologyGenes, PlantGlycine maxPhylogenyPlant DiseasesPropanolsSequence Analysis, RNA1-phenylpropanolethyleneEthylenesPropanolsTranscription Factors

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.