Evidence map›Paper›PMID 31570891›Full record

ArticleNature genetics2019

Germline NPM1 mutations lead to altered rRNA 2'-O-methylation and cause dyskeratosis congenita.

Daphna Nachmani, Anne H Bothmer, Silvia Grisendi, Aldo Mele, Dietmar Bothmer, Jonathan D Lee, Emanuele Monteleone, Ke Cheng, Yang Zhang, Assaf C Bester and 18 more

Abstract read
In one paragraph

Article in Nature genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 130 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. eLife · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Mechanisms of ribosomopathy and phase separation-related ribosomopathy.Journal of Zhejiang University. Science. B · 2025
    Review
  12. Review
  13. Science advances · 2025
    Article
  14. Ribosomes: from conserved origin to functional/medical mobility and heterogeneity.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Recent advances in AML with mutated NPM1.International journal of hematology · 2024
    Review

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 11 institutions in 7 countries.

Daphna NachmaniCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Anne H BothmerCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Silvia GrisendiCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Aldo MeleLaboratory of Molecular Neuro-Oncology and Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
Dietmar BothmerHochschule Zittau/Görlitz, Institute of Ecology and Environmental Protection, Zittau, Germany.
Jonathan D LeeCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Emanuele MonteleoneMolecular Biotechnology Center and Department of Molecular Biotechnology and Health Sciences, University of Turin, Turin, Italy.
Ke ChengCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Yang ZhangCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Assaf C BesterCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Alison GuzzettiCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Caitlin A MitchellCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Lourdes M MendezCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Olga PozdnyakovaDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.
Paolo SportolettiCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Maria-Paola MartelliInstitute of Hematology-Centro di Ricerche Emato-Oncologiche, University of Perugia, Perugia, Italy.
Tom J VulliamyBlizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, UK.
Modi SafraDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Schraga SchwartzDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel.
Lucio LuzzattoMuhimbili University of Health and Allied Sciences, Dar es Salaam, Tanzania.ORCID http://orcid.org/0000-0003-4663-8790
Olivier BluteauINSERM UMR944 and CNRS UMR7212, Hôpital Saint-Louis, Paris, France.
Jean SoulierINSERM UMR944 and CNRS UMR7212, Hôpital Saint-Louis, Paris, France.
Robert B DarnellLaboratory of Molecular Neuro-Oncology and Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.
Brunangelo FaliniInstitute of Hematology-Centro di Ricerche Emato-Oncologiche, University of Perugia, Perugia, Italy.
Inderjeet DokalBlizard Institute, Barts and The London School of Medicine and Dentistry, Queen Mary University of London, London, UK.
Keisuke ItoRuth L. and David S. Gottesman Institute for Stem Cell and Regenerative Medicine Research, Albert Einstein College of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0002-6702-9735
John G ClohessyCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-5186-9775
Pier Paolo PandolfiCancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA. ppandolf@bidmc.harvard.edu.ORCID http://orcid.org/0000-0002-5352-5295
Beth Israel Deaconess Medical Center · USCentre National de la Recherche Scientifique · FRHoward Hughes Medical Institute · USQueen Mary University of London · GBUniversity of Perugia · ITWeizmann Institute of Science · ILAlbert Einstein College of Medicine · USBrigham and Women's Hospital · USMuhimbili University of Health and Allied Sciences · TZUniversity of Turin · ITZittau/Görlitz University of Applied Sciences · DE

Funding

The Roles of Lipid Metabolism in the Maintenance of Hematopoietic Stem CellsR01DK098263 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI Keisuke Ito · 2013 to 2026
$5.2M
Targeting Tumor Suppressive Pathways for Cancer TherapyR35CA197529 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI PANDOLFI, PIER PAOLO · 2015 to 2019
$4.6M
Dissecting the canonical and non-canonical functions of Tet2 in hematopoietic stem cells and hematologic disordersR01HL148852 · NHLBI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Meelad Dawlaty, Keisuke Ito · 2019 to 2026
$4.4M
Single cell approach to uncovering factors regulating HSC division symmetry in vivoR01DK115577 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ITO, KEISUKE, LIN, CHARLES P. · 2017 to 2021
$2.9M
NPM1 regulation of 2'-O-methylation in hematopoiesis and bone marrow failure disorderR01DK115536 · NIDDK · BETH ISRAEL DEACONESS MEDICAL CENTER · PI CLOHESSY, JOHN · 2017 to 2019
$1.2M
Epigenetic regulation by microRNA of MDS pathogenesisR01DK100689 · NIDDK · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI ITO, KEISUKE · 2014 to 2017
$1.0M
Medical Research Council MR/P018440/1NCI NIH HHS R35 CA197529NHLBI NIH HHS R01 HL148852NIDDK NIH HHS R01 DK098263NIDDK NIH HHS R01 DK100689NIDDK NIH HHS R01 DK115536NIDDK NIH HHS R01 DK115577
6 · The paper itself

Abstract

RNA modifications are emerging as key determinants of gene expression. However, compelling genetic demonstrations of their relevance to human disease are lacking. Here, we link ribosomal RNA 2'-O-methylation (2'-O-Me) to the etiology of dyskeratosis congenita. We identify nucleophosmin (NPM1) as an essential regulator of 2'-O-Me on rRNA by directly binding C/D box small nucleolar RNAs, thereby modulating translation. We demonstrate the importance of 2'-O-Me-regulated translation for cellular growth, differentiation and hematopoietic stem cell maintenance, and show that Npm1 inactivation in adult hematopoietic stem cells results in bone marrow failure. We identify NPM1 germline mutations in patients with dyskeratosis congenita presenting with bone marrow failure and demonstrate that they are deficient in small nucleolar RNA binding. Mice harboring a dyskeratosis congenita germline Npm1 mutation recapitulate both hematological and nonhematological features of dyskeratosis congenita. Thus, our findings indicate that impaired 2'-O-Me can be etiological to human disease.

Indexed as

Germ-Line MutationRNA Processing, Post-TranscriptionalAnimalsDyskeratosis CongenitaEpigenomicsGene Expression ProfilingHematopoietic Stem CellsMaleMethylationMiceMice, Inbred C57BLMice, KnockoutNuclear ProteinsNucleophosminRNA, MessengerRNA, RibosomalNPM1 protein, humanNpm1 protein, mouseNuclear ProteinsNucleophosminRNA, MessengerRNA, RibosomalRNA, Small Nucleolar

Identifiers

PMID31570891
PMCPMC6858547
OpenAlexW2975526474

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.