Evidence map›Paper›PMID 31570867›Full record

ArticleNature microbiology2019

Cooking shapes the structure and function of the gut microbiome.

Rachel N Carmody, Jordan E Bisanz, Benjamin P Bowen, Corinne F Maurice, Svetlana Lyalina, Katherine B Louie, Daniel Treen, Katia S Chadaideh, Vayu Maini Rekdal, Elizabeth N Bess and 7 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Nature microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Roles of the gut microbiome in weight management.Nature reviews. Microbiology · 2023
    Pooled it
  2. Trial
  3. Digestion-resistant proteins support the healthy metabolite profiles associated with plant-based diets.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Reversions mask the contribution of adaptive evolution in microbiomes.bioRxiv : the preprint server for biology · 2024
    Article
  14. Article
  15. Review
  16. Engineering Strategies to Modulate the Gut Microbiome and Immune System.Journal of immunology (Baltimore, Md. : 1950) · 2024
    Review
  17. Article
  18. Review
  19. Article
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Rachel N CarmodyDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA, USA. carmody@fas.harvard.edu.ORCID http://orcid.org/0000-0001-7505-9646
Jordan E BisanzDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-8649-1706
Benjamin P BowenEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Corinne F MauriceCenter for Systems Biology, Harvard University, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-7187-3472
Svetlana LyalinaGladstone Institutes, University of California San Francisco, San Francisco, CA, USA.
Katherine B LouieEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
Daniel TreenEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-8896-0000
Katia S ChadaidehDepartment of Human Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Vayu Maini RekdalDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.
Elizabeth N BessDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0003-0349-0423
Peter SpanogiannopoulosDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA, USA.
Qi Yan AngDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA, USA.
Kylynda C BauerCenter for Systems Biology, Harvard University, Cambridge, MA, USA.
Thomas W BalonDepartment of Medicine, Metabolic Phenotyping Core and In Vivo Imaging System Core, Boston University, Boston, MA, USA.
Katherine S PollardGladstone Institutes, University of California San Francisco, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-9870-6196
Trent R NorthenEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-8404-3259
Peter J TurnbaughDepartment of Microbiology & Immunology, University of California San Francisco, San Francisco, CA, USA. peter.turnbaugh@ucsf.edu.ORCID http://orcid.org/0000-0002-0888-2875

Funding

Predicting and preventing drug metabolism by the human gut microbiomeR01HL122593 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Peter James Turnbaugh · 2016 to 2026
$5.7M
Gut microbial promotion of energy gain from processed dietsF32DK101154 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CARMODY, RACHEL NAOMI · 2013 to 2016
$141k
NHLBI NIH HHS R01 HL122593NIDDK NIH HHS F32 DK101154
6 · The paper itself

Abstract

Diet is a critical determinant of variation in gut microbial structure and function, outweighing even host genetics

Indexed as

CookingDietFoodGastrointestinal MicrobiomeAdultAnimalsBacteriaFecesFemaleGenetic VariationGerm-Free LifeHot TemperatureHumansMaleMetabolomicsMiceRNA, Ribosomal, 16S

Identifiers

PMID31570867
PMCPMC6886678

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.