Evidence map›Paper›PMID 31570746›Full record

ArticleScientific reports2019

Characterization of the Long Terminal Repeat of the Endogenous Retrovirus-derived microRNAs in the Olive Flounder.

Hee-Eun Lee, Ara Jo, Jennifer Im, Hee-Jae Cha, Woo-Jin Kim, Hyun Hee Kim, Dong-Soo Kim, Won Kim, Tae-Jin Yang, Heui-Soo Kim

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Hee-Eun LeeDepartment of Integrated Biological Science, Pusan National University, Busan, 46241, Republic of Korea.
Ara JoDepartment of Integrated Biological Science, Pusan National University, Busan, 46241, Republic of Korea.
Jennifer ImDepartment of Integrated Biological Science, Pusan National University, Busan, 46241, Republic of Korea.
Hee-Jae ChaDepartment of Parasitology and Genetics, Kosin University College of Medicine, Busan, 49267, Republic of Korea.ORCID http://orcid.org/0000-0002-6963-2685
Woo-Jin KimBiotechnology Research Divisions, National Fisheries Research and Development Institute, Busan, 46083, Republic of Korea.
Hyun Hee KimDepartments of Life Science, Sahmyook University, Seoul, 01795, Republic of Korea.
Dong-Soo KimDepartment of Marine Bio-Materials & Aquaculture, Pukyong National University, Busan, 48513, Republic of Korea.
Won KimSchool of Biological Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
Tae-Jin YangDepartment of Plant Science, Plant Genomics and Breeding Institute, Research Institute for Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, 08826, Republic of Korea.ORCID http://orcid.org/0000-0002-9676-8801
Heui-Soo KimInstitute of Systems Biology, Pusan National University, Busan, 46241, Republic of Korea. khs307@pusan.ac.kr.
Pusan National University · KRSeoul National University · KRSahmyook University · KRKosin University · KRPukyong National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endogenous retroviruses (ERVs) have been identified at different copy numbers in various organisms. The long terminal repeat (LTR) element of an ERV has the capacity to exert regulatory influence as both a promoter and enhancer of cellular genes. Here, we describe olive flounder (OF)-ERV9, derived from chromosome 9 of the olive flounder. OF-ERV9-LTR provide binding sites for various transcription factors and showed enhancer activity. The OF-ERV9-LTR demonstrates high sequence similarity with the 3' untranslated region (UTR) of various genes that also contain seed sequences (TGTTTTG) that bind the LTR-derived microRNA(miRNA), OF-miRNA-307. Additionally, OF-miRNA-307 collaborates with transcription factors located in OF-ERV9-LTR to regulate gene expression. Taken together, our data facilitates a greater understanding of the molecular function of OF-ERV families and suggests that OF-miRNA-307 may act as a super-enhancer miRNA regulating gene activity.

Indexed as

AnimalsEndogenous RetrovirusesFemaleFlounderMaleMicroRNAsPhylogenyTerminal Repeat SequencesMicroRNAs

Identifiers

PMID31570746
PMCPMC6768988
OpenAlexW2975996516

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.