Evidence map›Paper›PMID 31570743›Full record

ArticleScientific reports2019

Transcriptomic comparison between beetle strains selected for short and long durations of death feigning.

Hironobu Uchiyama, Ken Sasaki, Shogo Hinosawa, Keisuke Tanaka, Kentarou Matsumura, Shunsuke Yajima, Takahisa Miyatake

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 30 citations in OpenAlex.

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  9. Synchronising anti-predator behavior in the red flour beetleBehavioral ecology : official journal of the International Society for Behavioral Ecology
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Hironobu UchiyamaNODAI Genome Research Center, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo, 156-8502, Japan.
Ken SasakiGraduate School of Agriculture, Tamagawa University, Machida, Tokyo, 194-8610, Japan.
Shogo HinosawaGraduate School of Agriculture, Tamagawa University, Machida, Tokyo, 194-8610, Japan.
Keisuke TanakaNODAI Genome Research Center, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo, 156-8502, Japan.
Kentarou MatsumuraGraduate School of Environmental and Life Science, Okayama University, 1-1-1 Tsushina-naka, Kita-ku, Okayama, 700-8530, Japan.
Shunsuke YajimaNODAI Genome Research Center, Tokyo University of Agriculture, 1-1-1 Sakuragaoka, Setagaya-ku, Tokyo, 156-8502, Japan.
Takahisa MiyatakeGraduate School of Environmental and Life Science, Okayama University, 1-1-1 Tsushina-naka, Kita-ku, Okayama, 700-8530, Japan. miyatake@okayama-u.ac.jp.ORCID http://orcid.org/0000-0002-5476-0676
Tokyo University of Agriculture · JPTamagawa University · JPOkayama University · JPOkayama University of Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular basis of death feigning, an antipredator behavior that has received much attention recently, was analyzed. We compared the gene expression profiles of strains with different behaviors, i.e., different durations of death feigning, in the beetle Tribolium castaneum. Beetles artificially selected for short (S) and long (L) durations of death feigning for many generations were compared thoroughly by RNA sequencing. We identified 518 differentially expressed genes (DEGs) between the strains. The strains also showed divergence in unexpected gene expression regions. As expected from previous physiological studies, genes associated with the metabolic pathways of tyrosine, a precursor of dopamine, were differentially expressed between the S and L strains; these enzyme-encoding genes were expressed at higher levels in the L strain than in the S strain. We also found that several genes associated with insulin signaling were expressed at higher levels in the S strain than in the L strain. Quantitative real-time PCR analysis showed that the relative expression levels of Tchpd (encoding 4-hydroxyphenylpyruvate dioxygenase, Hpd) and Tcnat (encoding N-acetyltransferase, Nat) were significantly higher in the L strain than in the S strain, suggesting the influence of these enzymes on the supply of dopamine and duration of death feigning.

Indexed as

Immobility Response, TonicAnimalsFemaleGene Expression ProfilingGene Expression RegulationInsulinMaleMetabolic Networks and PathwaysReal-Time Polymerase Chain ReactionTime FactorsTriboliumTyrosineInsulinTyrosine

Identifiers

PMID31570743
PMCPMC6768993
OpenAlexW2975633540

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.