Evidence map›Paper›PMID 31570709›Full record

ArticleNature communications2019

The structural basis for RNA selectivity by the IMP family of RNA-binding proteins.

Jeetayu Biswas, Vivek L Patel, Varun Bhaskar, Jeffrey A Chao, Robert H Singer, Carolina Eliscovich

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Liquid-liquid phase separation in neural development.Cellular and molecular life sciences : CMLS · 2026
    Review
  8. Article
  9. IGF2BP3 recognizes mThe EMBO journal · 2026
    Article
  10. Article
  11. Article
  12. A circular RNA overcomes acquired resistance to BET inhibitors by antagonizing IGF2BP2-mediated c-MYC translation in TNBC.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Article
  14. Review
  15. IMPlications of IMP2 in RNA Biology and Disease.International journal of molecular sciences · 2025
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Jeetayu BiswasDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY, 10461, USA.ORCID http://orcid.org/0000-0002-1163-539X
Vivek L PatelDepartment of Radiation Oncology, Massachusetts General Hospital, Boston, MA, 02114, USA.
Varun BhaskarFriedrich Miescher Institute for Biomedical Research, CH-4058, Basel, Switzerland.
Jeffrey A ChaoFriedrich Miescher Institute for Biomedical Research, CH-4058, Basel, Switzerland.ORCID http://orcid.org/0000-0002-5895-9156
Robert H SingerDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY, 10461, USA. robert.singer@einstein.yu.edu.ORCID http://orcid.org/0000-0002-6725-0093
Carolina EliscovichDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY, 10461, USA. carolina.eliscovich@einstein.yu.edu.ORCID http://orcid.org/0000-0001-7653-5536
Albert Einstein College of Medicine · USFriedrich Miescher Institute · CHMassachusetts General Hospital · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007288 · NIGMS · YESHIVA UNIVERSITY · PI AKABAS, MYLES H. · 1985 to 2022
$35.6M
Mechanism of MRNA Localization and Localized Translation in NeuronsR01NS083085 · NINDS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI Sulagna Das, Robert H Singer · 2013 to 2026
$9.0M
Following mRNA from birth to death at single-molecule resolutionR35GM136296 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI SINGER, ROBERT H · 2020 to 2024
$2.3M
Console and probe upgrade for 600 MHz NMRS10OD016305 · OD · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI COWBURN, DAVID · 2014 to 2014
$595k
The sequence recognition, structure and function of the IMP family of mRNA binding proteinsF30CA214009 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI BISWAS, JEETAYU · 2017 to 2020
$199k
NCI NIH HHS F30 CA214009NIGMS NIH HHS R35 GM136296NIGMS NIH HHS T32 GM007288NIH HHS S10 OD016305NINDS NIH HHS R01 NS083085
6 · The paper itself

Abstract

The IGF2 mRNA-binding proteins (ZBP1/IMP1, IMP2, IMP3) are highly conserved post-transcriptional regulators of RNA stability, localization and translation. They play important roles in cell migration, neural development, metabolism and cancer cell survival. The knockout phenotypes of individual IMP proteins suggest that each family member regulates a unique pool of RNAs, yet evidence and an underlying mechanism for this is lacking. Here, we combine systematic evolution of ligands by exponential enrichment (SELEX) and NMR spectroscopy to demonstrate that the major RNA-binding domains of the two most distantly related IMPs (ZBP1 and IMP2) bind to different consensus sequences and regulate targets consistent with their knockout phenotypes and roles in disease. We find that the targeting specificity of each IMP is determined by few amino acids in their variable loops. As variable loops often differ amongst KH domain paralogs, we hypothesize that this is a general mechanism for evolving specificity and regulation of the transcriptome.

Indexed as

AnimalsBase SequenceCrystallography, X-RayDNA-Binding ProteinsGene Expression RegulationGene Knockdown TechniquesHumansLigandsMagnetic Resonance SpectroscopyMiceModels, MolecularMutationProtein BindingProtein DomainsRibonucleoproteins, Small NucleolarRNADNA-Binding ProteinsIGF2BP1 protein, humanIGF2BP2 protein, humanIMP3 protein, humanLigandsRibonucleoproteins, Small NucleolarRNARNA-Binding ProteinsRNA, MessengerZBP1 protein, human

Identifiers

PMID31570709
PMCPMC6768852
OpenAlexW2975633269

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.