Evidence map›Paper›PMID 31570626›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Empirical measures of mutational effects define neutral models of regulatory evolution in

Andrea Hodgins-Davis, Fabien Duveau, Elizabeth A Walker, Patricia J Wittkopp

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
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  11. Contributions of mutation and selection to regulatory variation: lessons from thePhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  12. Article
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  20. Empirical measures of mutational effects define neutral models of regulatory evolution inProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Andrea Hodgins-DavisDepartment of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109.
Fabien DuveauDepartment of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109.
Elizabeth A WalkerDepartment of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109.
Patricia J WittkoppDepartment of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109; wittkopp@umich.edu.ORCID 0000-0001-7619-0048

Funding

Genetic mechanisms and evolutionary processes underlying diversity within and between speciesR35GM118073 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WITTKOPP, PATRICIA JEAN · 2016 to 2025
$4.1M
Evolution of Gene Expression in YeastR01GM108826 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WITTKOPP, PATRICIA JEAN · 2013 to 2015
$865k
Environment-specific effects of new mutations on gene expressionF32GM115198 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HODGINS-DAVIS, ANDREA · 2015 to 2018
$171k
NIGMS NIH HHS F32 GM115198NIGMS NIH HHS R01 GM108826NIGMS NIH HHS R35 GM118073
6 · The paper itself

Abstract

Understanding how phenotypes evolve requires disentangling the effects of mutation generating new variation from the effects of selection filtering it. Tests for selection frequently assume that mutation introduces phenotypic variation symmetrically around the population mean, yet few studies have tested this assumption by deeply sampling the distributions of mutational effects for particular traits. Here, we examine distributions of mutational effects for gene expression in the budding yeast

Indexed as

Evolution, MolecularGene ExpressionGenome, FungalPhenotypePoint MutationSaccharomyces cerevisiaeSelection, Geneticgene expressionmutationquantitative geneticstranscription

Identifiers

PMID31570626
PMCPMC6800378

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.