ArticleProceedings of the National Academy of Sciences of the United States of America2019
GWAS with principal component analysis identifies a gene comprehensively controlling rice architecture.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers, 1 of them a synthesis that pooled it.
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Who cites it
97 citing papers in PubMed, 1 synthesis or guideline pooled it, 199 citations in OpenAlex.
- GWAS meta-analysis using a graph-based pan-genome enhanced gene mining efficiency for agronomic traits in rice.Nature communications · 2025Pooled it
- Univariate and multivariate QTL analyses provide insights into genetic architecture of variation of key volatile aroma compounds in cucumber (Cucumis sativus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Epidermal Cell Dynamics Regulates Rice Lamina Joint Morphogenesis and Leaf Angle Formation through OsZHD1 and OsZHD2 Regulation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026Article
- Comprehensive assessment of salt tolerance in nine spring maize hybrids across the entire growth period.Frontiers in plant science · 2026Article
- Identification and analysis of genomic regions influencing leaf morpho-physiological traits related to stress responses in greater yam (Dioscorea alata L.).BMC plant biology · 2025Article
- Evolutionary histories of functional mutations during the domestication and spread ofProceedings of the National Academy of Sciences of the United States of America · 2025Article
- Photoperiodic flowering regulators are required for nitrogen-dependent flowering delay in rice under long-day condition.Nature communications · 2025Article
- Next-generation translational genomics for developing future crops.Functional & integrative genomics · 2025Review
- Natural variation of CsUGT71A60 determines growth and cold tolerance via regulating cytokinin glycosylation in Camellia sinensis.Plant biotechnology journal · 2025Article
- Beyond the Standard GWAS-A Guide for Plant Biologists.Plant & cell physiology · 2025Review
- Natural Variation of PH8 Allele Improves Architecture and Cold Tolerance in Rice.Rice (New York, N.Y.) · 2025Article
- A comprehensive map of DNA-segment copy number variation in 491 genomes of common wheat uncovers genes associated with multiple agronomic traits.Plant communications · 2025Article
- Gene Pyramiding Strategies for Sink Size and Source Capacity for High-Yield Japonica Rice Breeding.Rice (New York, N.Y.) · 2025Review
- Genetic diversity analysis of phenotypic and agronomic traits in oat germplasm resources.Frontiers in plant science · 2025Article
- Effects of foliar selenium spraying on the growth and selenium content and morphology of rice.Frontiers in plant science · 2025Article
- DAMP-driven trained immunity: metabolic and epigenetic reprogramming in critical illness and chronic inflammation.Frontiers in immunology · 2025Review
- Multi-omics analysis reveals genetic architecture and local adaptation of coumarins metabolites in Populus.BMC plant biology · 2024Article
- SiRCle (Signature Regulatory Clustering) model integration reveals mechanisms of phenotype regulation in renal cancer.Genome medicine · 2024Article
- How have breeders adapted rice flowering to the growing region?Journal of integrative plant biology · 2024Article
- SUMOylation of rice DELLA SLR1 modulates transcriptional responses and improves yield under salt stress.Planta · 2024Article
37 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
17 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Elucidation of the genetic control of rice architecture is crucial due to the global demand for high crop yields. Rice architecture is a complex trait affected by plant height, tillering, and panicle morphology. In this study, principal component analysis (PCA) on 8 typical traits related to plant architecture revealed that the first principal component (PC), PC1, provided the most information on traits that determine rice architecture. A genome-wide association study (GWAS) using PC1 as a dependent variable was used to isolate a gene encoding rice, SPINDLY (OsSPY), that activates the gibberellin (GA) signal suppression protein SLR1. The effect of GA signaling on the regulation of rice architecture was confirmed in 9 types of isogenic plant having different levels of GA responsiveness. Further population genetics analysis demonstrated that the functional allele of
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