Evidence map›Paper›PMID 31570581›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Rotational symmetry of the structured Chip/LDB-SSDP core module of the Wnt enhanceosome.

Miha Renko, Marc Fiedler, Trevor J Rutherford, Jonas V Schaefer, Andreas Plückthun, Mariann Bienz

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Mechanisms of Enhancer-Promoter Interactions in Higher Eukaryotes.International journal of molecular sciences · 2021
    Review
  5. The structural biology of canonical Wnt signalling.Biochemical Society transactions · 2020
    Review
  6. Crystal structure of human LDB1 in complex with SSBP2.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Miha RenkoMedical Research Council Laboratory of Molecular Biology, CB2 0QH Cambridge, United Kingdom.ORCID 0000-0001-9842-8117
Marc FiedlerMedical Research Council Laboratory of Molecular Biology, CB2 0QH Cambridge, United Kingdom.
Trevor J RutherfordMedical Research Council Laboratory of Molecular Biology, CB2 0QH Cambridge, United Kingdom.
Jonas V SchaeferDepartment of Biochemistry, University of Zurich, 8057 Zurich, Switzerland.
Andreas PlückthunDepartment of Biochemistry, University of Zurich, 8057 Zurich, Switzerland.ORCID 0000-0003-4191-5306
Mariann BienzMedical Research Council Laboratory of Molecular Biology, CB2 0QH Cambridge, United Kingdom; mb2@mrc-lmb.cam.ac.uk.
MRC Laboratory of Molecular Biology · GBUniversity of Zurich · CH

Funding

Cancer Research UK 24639Cancer Research UK C7379/A15291Cancer Research UK C7379/A24639Medical Research Council MC_U105192713Medical Research Council U105192713
6 · The paper itself

Abstract

The Chip/LIM-domain binding protein (LDB)-single-stranded DNA-binding protein (SSDP) (ChiLS) complex controls numerous cell-fate decisions in animal cells, by mediating transcription of developmental control genes via remote enhancers. ChiLS is recruited to these enhancers by lineage-specific LIM-domain proteins that bind to its Chip/LDB subunit. ChiLS recently emerged as the core module of the Wnt enhanceosome, a multiprotein complex that primes developmental control genes for timely Wnt responses. ChiLS binds to NPFxD motifs within Pygopus (Pygo) and the Osa/ARID1A subunit of the BAF chromatin remodeling complex, which could synergize with LIM proteins in tethering ChiLS to enhancers. Chip/LDB and SSDP both contain N-terminal dimerization domains that constitute the bulk of their structured cores. Here, we report the crystal structures of these dimerization domains, in part aided by DARPin chaperones. We conducted systematic surface scanning by structure-designed mutations, followed by in vitro and in vivo binding assays, to determine conserved surface residues required for binding between Chip/LDB, SSDP, and Pygo-NPFxD. Based on this, and on the 4:2 (SSDP-Chip/LDB) stoichiometry of ChiLS, we derive a highly constrained structural model for this complex, which adopts a rotationally symmetrical SSDP

Indexed as

Amino Acid SequenceDimerizationDNA-Binding ProteinsEnhancer Elements, GeneticGene Expression RegulationHumansLIM Domain ProteinsModels, MolecularMultiprotein ComplexesPromoter Regions, GeneticProtein BindingProtein DomainsTranscription FactorsWnt ProteinsDNA-Binding ProteinsLDB1 protein, humanLDB2 protein, humanLIM Domain ProteinsMultiprotein ComplexesSSBP3 protein, humanTranscription FactorsWnt ProteinsChip/LDB1-SSDPPygoWnt enhanceosome

Identifiers

PMID31570581
PMCPMC6800368
OpenAlexW2978760639

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.