Evidence map›Paper›PMID 31570111›Full record

ArticleJournal of translational medicine2019

CircRNA expression profiles in human dental pulp stromal cells undergoing oxidative stress.

Jingying Zhang, Dan Li, Dan Wang, Kenny Man, Xuebin Yang

Open access · goldAbstract read
In one paragraph

Article in Journal of translational medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Jingying ZhangThe Second Clinical Medical College, Guangdong Medical University, Dongguan, 523808, Guangdong, China. jingyingzhang2014@foxmail.com.ORCID 0000-0002-7971-7180
Dan LiCollege of Life Science and Technology, Dalian University, Dalian, 116622, Liaoning, China.
Dan WangCollege of Medicine, Dalian University, Dalian, 116622, Liaoning, China.
Kenny ManBiomaterial and Tissue Engineering Group, Division of Oral Biology, School of Dentistry, Wellcome Trust Brenner Building, St. James's University Hospital, University of Leeds, Leeds, LS9 7TF, UK.
Xuebin YangBiomaterial and Tissue Engineering Group, Division of Oral Biology, School of Dentistry, Wellcome Trust Brenner Building, St. James's University Hospital, University of Leeds, Leeds, LS9 7TF, UK.
Dalian University · CNUniversity of Leeds · GBGuangdong Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOxidative stress has a determinantal effect on human dental pulp stromal cells (hDPSCs), including affecting their longevity and functionality. Circular RNAs (circRNAs) play an essential role in stromal cell behavior; however, the exact mechanism in which circRNAs functions within hDPSCs were undergoing oxidative stress remains unclear. The purpose of this study is to assess the global changes and characteristics of circRNAs in hDPSCs undergoing oxidative stress.

methodsUsing an oxidative stress model of hDPSCs, we applied microarray analysis to examine the circRNAs profiles. We confirmed the changes in circRNAs by quantitative Real-Time PCR (qRT-PCR). Furthermore, bioinformatics tools, including a miRcode map, TargetScan, gene ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, were reconstructed for further assessment. SIRT1 gene and protein expression were tested by qRT-PCR and In Cell-Western analysis.

resultsWe revealed 330 upregulated, and 533 downregulated circRNAs undergoing oxidative stress in hDPSCs and confirmed three circRNAs distinct expressions (hsa_circ_0000257, hsa_circ_0087354, and hsa_circ_0001946) in hDPSCs undergoing oxidative stress by qRT-PCR. GO, and KEGG pathway enrichment revealed the differentially expressed circRNAs might participate in p53 and cell cycle signaling networks associated with oxidative stress. SIRT1 gene and protein expression was reduced in the oxidatively stressed cells (OSC) group compared to untreated cells (UC).

conclusionsThe findings of this study has provided new insights into circRNAs and a basis for further studies assessing the potential functions of hsa_circ_0000257, hsa_circ_0087354, and hsa_circ_0001946 in oxidatively stressed hDPSCs.

Indexed as

Gene Expression RegulationOxidative StressBase SequenceCell ShapeDental PulpDown-RegulationFemaleGene Expression ProfilingHumansHydrogen PeroxideMaleMicroRNAsModels, BiologicalMolecular Sequence AnnotationReactive Oxygen SpeciesRNA, CircularHydrogen PeroxideMicroRNAsReactive Oxygen SpeciesRNA, CircularSirtuin 1CircRNAHuman Dental Pulp Stromal CellMicroarrayOxidative stress

Identifiers

PMID31570111
PMCPMC6771114
OpenAlexW2978047869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.