Evidence map›Paper›PMID 31569739›Full record

ArticleBiomolecules2019

Kinetic Transition in Amyloid Assembly as a Screening Assay for Oligomer-Selective Dyes.

Jeremy Barton, D Sebastian Arias, Chamani Niyangoda, Gustavo Borjas, Nathan Le, Saefallah Mohamed, Martin Muschol

Abstract read
In one paragraph

Article in Biomolecules, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Human RAD51 Protein Forms Amyloid-like AggregatesInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jeremy BartonDepartment of Physics, University of South Florida, Tampa, FL 33620, USA. jeremybarton@mail.usf.edu.
D Sebastian AriasDepartment of Physics, University of South Florida, Tampa, FL 33620, USA. sebasdarias95@gmail.com.
Chamani NiyangodaDepartment of Physics, University of South Florida, Tampa, FL 33620, USA. chamani@mail.usf.edu.
Gustavo BorjasDepartment of Physics, University of South Florida, Tampa, FL 33620, USA. gustavo.jesus.borjas@emory.edu.
Nathan LeDepartment of Physics, University of South Florida, Tampa, FL 33620, USA. nathanle@mail.usf.edu.
Saefallah MohamedDepartment of Physics, University of South Florida, Tampa, FL 33620, USA. smohamed2@mail.usf.edu.
Martin MuscholDepartment of Physics, University of South Florida, Tampa, FL 33620, USA. mmuschol@usf.edu.

Funding

Does Charge Repulsion of Amyloids Regulate their Assembly Pathways and Toxicity?R15GM097723 · NIGMS · UNIVERSITY OF SOUTH FLORIDA · PI MUSCHOL, MARTIN · 2012 to 2016
$773k
NIGMS NIH HHS R15 GM097723
6 · The paper itself

Abstract

Assembly of amyloid fibrils and small globular oligomers is associated with a significant number of human disorders that include Alzheimer's disease, senile systemic amyloidosis, and type II diabetes. Recent findings implicate small amyloid oligomers as the dominant aggregate species mediating the toxic effects in these disorders. However, validation of this hypothesis has been hampered by the dearth of experimental techniques to detect, quantify, and discriminate oligomeric intermediates from late-stage fibrils, in vitro and in vivo. We have shown that the onset of significant oligomer formation is associated with a transition in thioflavin T kinetics from sigmoidal to biphasic kinetics. Here we showed that this transition can be exploited for screening fluorophores for preferential responses to oligomer over fibril formation. This assay identified crystal violet as a strongly selective oligomer-indicator dye for lysozyme. Simultaneous recordings of amyloid kinetics with thioflavin T and crystal violet enabled us to separate the combined signals into their underlying oligomeric and fibrillar components. We provided further evidence that this screening assay could be extended to amyloid-β peptides under physiological conditions. Identification of oligomer-selective dyes not only holds the promise of biomedical applications but provides new approaches for unraveling the mechanisms underlying oligomer versus fibril formation in amyloid assembly.

Indexed as

AmyloidBenzothiazolesFluorescent DyesGentian VioletHumansKineticsAmyloidBenzothiazolesFluorescent DyesGentian Violetthioflavin Tamyloidosisassembly pathwaydye fluorescenceoligomer formationthioflavin T

Identifiers

PMID31569739
PMCPMC6843685

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.