Evidence map›Paper›PMID 31569429›Full record

ArticleInternational journal of molecular sciences2019

Skin Doctor: Machine Learning Models for Skin Sensitization Prediction that Provide Estimates and Indicators of Prediction Reliability.

Anke Wilm, Conrad Stork, Christoph Bauer, Andreas Schepky, Jochen Kühnl, Johannes Kirchmair

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Use ofFrontiers in toxicology · 2024
    Article
  5. Review of machine learning and deep learning models for toxicity prediction.Experimental biology and medicine (Maywood, N.J.) · 2023
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anke WilmCenter for Bioinformatics, Universität Hamburg, 20146 Hamburg, Germany. wilm@zbh.uni-hamburg.de.
Conrad StorkCenter for Bioinformatics, Universität Hamburg, 20146 Hamburg, Germany. stork@zbh.uni-hamburg.de.
Christoph BauerDepartment of Chemistry, University of Bergen, 5020 Bergen, Norway. christoph.bauer@uib.no.ORCID 0000-0002-6035-6944
Andreas SchepkyFront End Innovation, Beiersdorf AG, 20253 Hamburg, Germany. andreas.schepky@beiersdorf.com.ORCID 0000-0001-5258-3605
Jochen KühnlFront End Innovation, Beiersdorf AG, 20253 Hamburg, Germany. jochen.kuehnl@beiersdorf.com.ORCID 0000-0001-8421-9381
Johannes KirchmairCenter for Bioinformatics, Universität Hamburg, 20146 Hamburg, Germany. kirchmair@zbh.uni-hamburg.de.ORCID 0000-0003-2667-5877

Funding

Bergens Forskningsstiftelse BFS2017TMT01
6 · The paper itself

Abstract

The ability to predict the skin sensitization potential of small organic molecules is of high importance to the development and safe application of cosmetics, drugs and pesticides. One of the most widely accepted methods for predicting this hazard is the local lymph node assay (LLNA). The goal of this work was to develop in silico models for the prediction of the skin sensitization potential of small molecules that go beyond the state of the art, with larger LLNA data sets and, most importantly, a robust and intuitive definition of the applicability domain, paired with additional indicators of the reliability of predictions. We explored a large variety of molecular descriptors and fingerprints in combination with random forest and support vector machine classifiers. The most suitable models were tested on holdout data, on which they yielded competitive performance (Matthews correlation coefficients up to 0.52; accuracies up to 0.76; areas under the receiver operating characteristic curves up to 0.83). The most favorable models are available via a public web service that, in addition to predictions, provides assessments of the applicability domain and indicators of the reliability of the individual predictions.

Indexed as

ImmunizationLocal Lymph Node AssayMachine LearningCosmeticsDrug-Related Side Effects and Adverse ReactionsMolecular MimicryPrognosisReproducibility of ResultsSkinCosmeticsapplicability domainchemical spacecosmeticsdrugsin silico modelslocal lymph node assay (LLNA)machine learningpesticidespredictionskin sensitization potential

Identifiers

PMID31569429
PMCPMC6801714

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.