Evidence map›Paper›PMID 31569353›Full record

ArticleInternational journal of molecular sciences2019

Genome-Wide CpG Island Methylation Profiles of Cutaneous Skin with and without HPV Infection.

Laith N Al-Eitan, Mansour A Alghamdi, Amneh H Tarkhan, Firas A Al-Qarqaz

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Laith N Al-EitanDepartment of Applied Biological Sciences, Jordan University of Science and Technology, Irbid 22110, Jordan. lneitan@just.edu.jo.ORCID 0000-0003-0064-0190
Mansour A AlghamdiDepartment of Human Anatomy, College of Medicine, King Khalid University, Abha 61421, Saudi Arabia. m.alghamdi@kku.edu.sa.
Amneh H TarkhanDepartment of Applied Biological Sciences, Jordan University of Science and Technology, Irbid 22110, Jordan. amneht92@gmail.com.ORCID 0000-0002-1035-0130
Firas A Al-QarqazDepartment of Internal Medicine, Jordan University of Science and Technology, Irbid 22110, Jordan. fqarqaz@just.edu.jo.ORCID 0000-0003-4876-7406
Jordan University of Science and Technology · JOKing Khalid University · SA

Funding

Jordan University of Science and Technology 184/2017
6 · The paper itself

Abstract

HPV infection is one of the most commonly transmitted diseases among the global population. While it can be asymptomatic, non-genital HPV infection often gives rise to cutaneous warts, which are benign growths arising from the epidermal layer of the skin. This study aimed to produce a global analysis of the ways in which cutaneous wart formation affected the CpG island methylome. The Infinium MethylationEPIC BeadChip microarray was utilized in order to quantitatively interrogate CpG island methylation in genomic DNA extracted from 24 paired wart and normal skin samples. Differential methylation analysis was carried out by means of assigning a combined rank score using RnBeads. The 1000 top-ranking CpG islands were then subject to Locus Overlap Analysis (LOLA) for enrichment of genomic ranges, while signaling pathway analysis was carried out on the top 100 differentially methylated CpG islands. Differential methylation analysis illustrated that the most differentially methylated CpG islands in warts lay within the

Indexed as

DNA MethylationEpigenesis, GeneticEpigenomicsGenome, HumanCpG IslandsDermatitisGene Expression ProfilingHumansPapillomavirus InfectionsTranscriptomeCpGDNA methylationepigeneticsHPVwarts

Identifiers

PMID31569353
PMCPMC6801420
OpenAlexW2975086406

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.