Evidence map›Paper›PMID 31568607›Full record

ArticleJournal of clinical laboratory analysis2019

Association between nucleotide excision repair gene polymorphism and colorectal cancer risk.

Yujie Zhang, Shenshen Wu, Xiumei Zhou, Fang Huang, Rui Chen, Yigang Wang, Jiong Wu

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Targeting Germline- and Tumor-Associated Nucleotide Excision Repair Defects in Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2021
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Yujie ZhangCollege of Life and Medicine Sciences, Zhejiang Sci-Tech University, Hangzhou, China.ORCID https://orcid.org/0000-0002-1882-8127
Shenshen WuKey Laboratory of Environmental Medicine Engineering School of Public Health, Southeast University, Nanjing, China.
Xiumei ZhouCollege of Life and Medicine Sciences, Zhejiang Sci-Tech University, Hangzhou, China.
Fang HuangDepartment of Pathology, Zhejiang Provincial People's Hospital, People's Hospital of Hangzhou Medical College, Hangzhou, China.
Rui ChenKey Laboratory of Environmental Medicine Engineering School of Public Health, Southeast University, Nanjing, China.
Yigang WangCollege of Life and Medicine Sciences, Zhejiang Sci-Tech University, Hangzhou, China.
Jiong WuCollege of Life and Medicine Sciences, Zhejiang Sci-Tech University, Hangzhou, China.
Zhejiang Sci-Tech University · CNSoutheast University · CNJiangsu Normal University · CNZhejiang Provincial People's Hospital · CN

Funding

National Nature Science Foundation of China 81803069Postgraduate Research & Practice Innovation Program of Jiangsu Province KYCX17_0187Zhejiang Provincial Natural Science Foundation of China LY16H160056Zhejiang Provincial Natural Science Foundation of China LY18C070002
6 · The paper itself

Abstract

backgroundThe nucleotide excision repair system removes a wide variety of DNA lesions from the human genome, and plays an important role in maintaining genomic stability. Single nucleotide polymorphisms (SNPs) in nucleotide excision repair are associated with the various forms of tumor susceptibility. However, the relationship between NER polymorphism and colorectal cancer is not clear.

methodsIn this study, three candidate SNPs including ERCC4 (rs6498486), ERCC1 (rs3212986), and ERCC5 (rs17655) were analyzed in 1101colorectal cancer patients and 1175 healthy control patients from Jiangsu province (China). Then, we performed Immunohistochemistry, qPCR, and luciferase assay to determine the potential mechanisms.

resultsThe ERCC4 rs6498486 AC/CC genotypes show lower susceptibility to CRC than those carrying rs6498486 AA (Adjusted OR = 0.82, 95% CI = 0.69-0.97). However, we did not observe any association between the colorectal cancer risk and the rs3212986(ERCC1) and rs17655(ERCC5) polymorphisms. Immunohistochemistry, qPCR, and luciferase assay revealed that rs6498486 A > C polymorphism in the ERCC4 promoter region could lessen the expression level of ERCC4 by impacting the binding ability of the transcription factor NF-kB, thereby affecting the transcription activity of the ERCC4 gene and decreased ERCC4 gene expression.

conclusionIn brief, our finding demonstrated that ERCC4 rs6498486 serves as a potential biomarker of CRC susceptibility for the development of colorectal cancer.

Indexed as

Polymorphism, Single NucleotideBiomarkers, TumorCase-Control StudiesChinaColorectal NeoplasmsDNA-Binding ProteinsDNA Excision Repair Protein ERCC-5EndonucleasesFemaleFollow-Up StudiesGenetic Predisposition to DiseaseGenotypeHumansLymphatic MetastasisMaleMiddle AgedBiomarkers, TumorDNA-Binding ProteinsDNA Excision Repair Protein ERCC-5EndonucleasesERCC1 protein, humanNuclear ProteinsTranscription Factorsxeroderma pigmentosum group F proteincolorectal cancerERCC4polymorphismrs6498486

Identifiers

PMID31568607
PMCPMC6805325
OpenAlexW2977534346

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.