Evidence map›Paper›PMID 31568482›Full record

ArticlePloS one2019

Effects of Lyse-It on endonuclease fragmentation, function and activity.

Tonya M Santaus, Fan Zhang, Shan Li, O Colin Stine, Chris D Geddes

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Tonya M SantausChemistry and Biochemistry Department, University of Maryland, Baltimore County, Baltimore, Maryland, United States of America.ORCID 0000-0002-8643-2343
Fan ZhangChemistry and Biochemistry Department, University of Maryland, Baltimore County, Baltimore, Maryland, United States of America.
Shan LiEpidemiology and Public Health Department, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.
O Colin StineEpidemiology and Public Health Department, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.
Chris D GeddesChemistry and Biochemistry Department, University of Maryland, Baltimore County, Baltimore, Maryland, United States of America.ORCID 0000-0002-9110-6374
Fluor (United States) · USUniversity of Maryland, Baltimore · USUniversity of Maryland, Baltimore County · US

Funding

Graduate Training at The Chemistry Biology InterfaceT32GM066706 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE COUNTY · PI SELEY-RADTKE, KATHERINE L, SMITH, AARON T · 2004 to 2023
$3.3M
NIGMS NIH HHS T32 GM066706
6 · The paper itself

Abstract

Nucleases are enzymes that can degrade genomic DNA and RNA that decrease the accuracy of quantitative measures of those nucleic acids. Here, we study conventional heating, standard microwave irradiation, and Lyse-It, a microwave-based lysing technology, for the potential to fragment and inactivate DNA and RNA endonucleases. Lyse-It employs the use of highly focused microwave irradiation to the sample ultimately fragmenting and inactivating RNase A, RNase B, and DNase I. Nuclease size and fragmentation were determined visually and quantitatively by SDS polyacrylamide gel electrophoresis and the mini-gel Agilent 2100 Bioanalyzer system, with a weighted size calculated to depict the wide range of nuclease fragmentation. Enzyme activity assays were conducted, and the rates were calculated to determine the effect of various lysing conditions on each of the nucleases. The results shown in this paper clearly demonstrate that Lyse-It is a rapid and highly efficient way to degrade and inactivate nucleases so that nucleic acids can be retained for down-stream detection.

Indexed as

Deoxyribonuclease IDetergentsDNAElectrophoresis, Polyacrylamide GelHot TemperatureHydrolysisMicrowavesMolecular WeightPeptide FragmentsProteolysisRibonuclease, PancreaticRibonucleasesRNASolutionsDeoxyribonuclease IDetergentsDNAPeptide Fragmentsribonuclease BRibonuclease, PancreaticRibonucleasesRNASolutions

Identifiers

PMID31568482
PMCPMC6768537
OpenAlexW2977366716

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.