Evidence map›Paper›PMID 31567189›Full record

ArticleThe American journal of surgical pathology2020

Colonic Adenocarcinomas Harboring NTRK Fusion Genes: A Clinicopathologic and Molecular Genetic Study of 16 Cases and Review of the Literature.

Jerzy Lasota, Małgorzata Chłopek, Jennifer Lamoureux, Jason Christiansen, Artur Kowalik, Bartosz Wasąg, Anna Felisiak-Gołąbek, Abbas Agaimy, Wojciech Biernat, Vincenzo Canzonieri and 32 more

Abstract read
In one paragraph

Article in The American journal of surgical pathology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Annals of medicine and surgery (2012) · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Unusual PEComa With PRCC :: TFE3 Fusion Mimicking Sinonasal Tract Melanoma.Applied immunohistochemistry & molecular morphology : AIMM · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. A review of NTRK fusions in cancer.Annals of medicine and surgery (2012) · 2022
    Review
  19. Diagnostics (Basel, Switzerland) · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors.

Jerzy LasotaLaboratory of Pathology, National Cancer Institute, Bethesda, MD.
Małgorzata ChłopekLaboratory of Pathology, National Cancer Institute, Bethesda, MD.
Jennifer LamoureuxIgnyta Inc., San Diego, CA.
Jason ChristiansenIgnyta Inc., San Diego, CA.
Artur KowalikDepartments of Molecular Diagnostics.
Bartosz WasągDepartments of Biology and Genetics.
Anna Felisiak-GołąbekLaboratory of Pathology, National Cancer Institute, Bethesda, MD.
Abbas AgaimyInstitute of Pathology, University Hospital of Erlangen, Erlangen, Germany.
Wojciech BiernatPathomorphology, Medical University of Gdańsk.
Vincenzo CanzonieriDivision of Pathology, National Cancer Institute, Aviano.
Giovanni CentonzeDepartment of Pathology and Laboratory Medicine, Milan, Italy.
Ewa ChmielikDiagnostic Histopathology Laboratory, Opole.
Ondrej DaumSikl's Department of Pathology, University Hospital, Charles University in Prague, Medical Faculty in Plzeň, Plzeň, Czech Republic.
Magdalena DubováSikl's Department of Pathology, University Hospital, Charles University in Prague, Medical Faculty in Plzeň, Plzeň, Czech Republic.
Ireneusz DziubaHealth Sciences and Physical Education, University of Technology and Humanities, Radom.
Sebastian GoertzDepartment of Pathomorphology, Copernicus Hospital Gdańsk, Gdańsk.
Stanisław GóźdźClinical Oncology.
Anna Guttmejer-NasierowskaDepartment of Pathology, Central Clinical Hospital of the Ministry of Interior.
Caj HaglundDepartment of Surgery, University of Helsinki.
Agnieszka HałońDivision of Pathomorphology and Oncological Cytology, Wrocław Medical University, Wrocław.
Arndt HartmannInstitute of Pathology, University Hospital of Erlangen, Erlangen, Germany.
Shingo InagumaDepartment of Pathology, Aichi Medical University School of Medicine, Nagakute, Japan.
Ewa Iżycka-ŚwieszewskaDepartment of Pathomorphology, Copernicus Hospital Gdańsk, Gdańsk.
Maciej KaczorowskiDivision of Pathomorphology and Oncological Cytology, Wrocław Medical University, Wrocław.
Paweł KitaDiagnostic Histopathology Laboratory, Opole.
Małgorzata KołosDepartment of Pathology, Central Clinical Hospital of the Ministry of Interior.
Janusz KopczyńskiSurgical Pathology, Holycross Cancer Center.
Michal MichalSikl's Department of Pathology, University Hospital, Charles University in Prague, Medical Faculty in Plzeň, Plzeň, Czech Republic.
Massimo MilioneDepartment of Pathology and Laboratory Medicine, Milan, Italy.
Krzysztof OkońDepartment of Pathomorphology, Jagiellonian University.
Rafał PęksaPathomorphology, Medical University of Gdańsk.
Michał PyzlakDepartment of Pathology, Prof. Orłowski-Memorial Independent Public Clinical Hospital and Center for Medical Postgraduate Education, Warsaw.
Ari RistimäkiDepartment of Pathology, Research Programs and HUSLAB, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.
Janusz RyśDepartment of Tumor Pathology, Centre of Oncology, Maria Skłodowska-Curie Memorial Institute, Kraków.
Blażej SzostakDepartment of Pathomorphology, Provincial Hospital, Olsztyn.
Joanna SzporDepartment of Pathomorphology, Jagiellonian University.
Justyna SzumiłoDepartment of Clinical Pathomorphology, Medical University of Lublin, Lublin.
Leszek TeresińskiDepartment of Pathomorphology, Provincial Hospital, Gorzów Wielkopolski.
Piotr WaloszczykIndependent Laboratory of Pathology, Zdunomed, Szczecin.
Jarosław WejmanDepartment of Pathology, Prof. Orłowski-Memorial Independent Public Clinical Hospital and Center for Medical Postgraduate Education, Warsaw.
Wojciech WesołowskiLaboratory of Pathology ElPat, Elbląg, Poland.
Markku MiettinenLaboratory of Pathology, National Cancer Institute, Bethesda, MD.

Funding

Immunohistochemical and genomic analysis of tumorsZIABC011427 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MIETTINEN, MARKKU · 2012 to 2025
$24.0M
Intramural NIH HHS Z99 CA999999Intramural NIH HHS ZIA BC011427
6 · The paper itself

Abstract

This study was undertaken to determine the frequency, and the clinicopathologic and genetic features, of colon cancers driven by neurotrophic receptor tyrosine kinase (NTRK) gene fusions. Of the 7008 tumors screened for NTRK expression using a pan-Trk antibody, 16 (0.23%) had Trk immunoreactivity. ArcherDx assay detected TPM3-NTRK1 (n=9), LMNA-NTRK1 (n=3), TPR-NTRK1 (n=2) and EML4-NTRK3 (n=1) fusion transcripts in 15 cases with sufficient RNA quality. Patients were predominantly women (median age: 63 y). The tumors involved the right (n=12) and left colon unequally and were either stage T3 (n=12) or T4. Local lymph node and distant metastases were seen at presentation in 6 and 1 patients, respectively. Lymphovascular invasion was present in all cases. Histologically, tumors showed moderate to poor (n=11) differentiation with a partly or entirely solid pattern (n=5) and mucinous component (n=10), including 1 case with sheets of signet ring cells. DNA mismatch repair-deficient phenotype was seen in 13 cases. Tumor-infiltrating CD4/CD8 lymphocytes were prominent in 9 cases. Programmed death-ligand 1 positive tumor-infiltrating immune cells and focal tumor cell positivity were seen in the majority of cases. CDX2 expression and loss of CK20 and MUC2 expression were frequent. CK7 was expressed in 5 cases. No mutations in BRAF, RAS, and PIK3CA were identified. However, other genes of the PI3K-AKT/MTOR pathway were mutated. In several cases, components of Wnt/β-catenin (APC, AMER1, CTNNB1), p53, and TGFβ (ACVR2A, TGFBR2) pathways were mutated. However, no SMAD4 mutations were found. Two tumors harbored FBXW7 tumor suppressor gene mutations. NTRK fusion tumors constitute a distinct but rare subgroup of colorectal carcinomas.

Indexed as

AdenocarcinomaAgedAged, 80 and overBiomarkers, TumorColonic NeoplasmsFemaleFollow-Up StudiesGene Expression Regulation, NeoplasticHumansImmunohistochemistryMaleMembrane GlycoproteinsMiddle AgedNeoplasm StagingOncogene FusionOncogene Proteins, FusionBiomarkers, TumorMembrane GlycoproteinsOncogene Proteins, FusionReceptor Protein-Tyrosine KinasesReceptor, trkAReceptor, trkBReceptor, trkCtropomyosin-related kinase-B, human

Identifiers

PMID31567189
PMCPMC8170835

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.