Evidence map›Paper›PMID 31566583›Full record

ArticleThe Journal of clinical investigation2019

FOXN1 compound heterozygous mutations cause selective thymic hypoplasia in humans.

Qiumei Du, Larry K Huynh, Fatma Coskun, Erika Molina, Matthew A King, Prithvi Raj, Shaheen Khan, Igor Dozmorov, Christine M Seroogy, Christian A Wysocki and 5 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in The Journal of clinical investigation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Informed clinical decisions by outfoxing human FOXN1 variants.The Journal of allergy and clinical immunology · 2025
    Review
  5. Article
  6. Utilization of next-generation sequencing to define the role of heterozygousThe journal of allergy and clinical immunology. Global · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Comprehensive phenotypic analysis of diverse FOXN1 variants.The Journal of allergy and clinical immunology · 2023
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Inborn errors of immunity associated with defects of thymic development.Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Qiumei DuDepartments of Immunology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Larry K HuynhDepartments of Immunology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Fatma CoskunDepartments of Immunology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Erika MolinaDepartments of Immunology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Matthew A KingDepartments of Immunology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Prithvi RajDepartments of Immunology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Shaheen KhanDepartments of Immunology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Igor DozmorovDepartments of Immunology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Christine M SeroogyDepartment of Pediatrics, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, USA.
Christian A WysockiDepartment of Pediatrics, and.
Grace T PadronUniversity of Miami Miller School of Medicine, Miami, Florida, USA.
Tyler R YatesDepartment of Pediatrics and.
M Louise MarkertDepartment of Pediatrics and.
M Teresa de la MorenaDivision of Immunology, Department of Pediatrics, University of Washington and Seattle Children's Hospital, Seattle, Washington , USA.
Nicolai Sc van OersDepartments of Immunology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
The University of Texas Southwestern Medical Center · USPediatrics and Genetics · USDuke Medical Center · USSeattle Children's Hospital · USUniversity of Miami · USUniversity of Wisconsin–Madison · US

Funding

Long noncoding RNAs and their contribution to 22q11.2 deletion syndromeR01AI114523 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI VAN OERS, NICOLAI STANISLAS CYRILLE · 2015 to 2024
$4.1M
The Functions of Novel FOXN1 Compound Heterozygous Mutations in PIDs PatientsR21AI144140 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI VAN OERS, NICOLAI STANISLAS CYRILLE · 2019 to 2020
$446k
NIAID NIH HHS R01 AI114523NIAID NIH HHS R21 AI144140
6 · The paper itself

Abstract

We report on 2 patients with compound heterozygous mutations in forkhead box N1 (FOXN1), a transcription factor essential for thymic epithelial cell (TEC) differentiation. TECs are critical for T cell development. Both patients had a presentation consistent with T-/loB+NK+ SCID, with normal hair and nails, distinct from the classic nude/SCID phenotype in individuals with autosomal-recessive FOXN1 mutations. To understand the basis of this phenotype and the effects of the mutations on FOXN1, we generated mice using CRISPR-Cas9 technology to genocopy mutations in 1 of the patients. The mice with the Foxn1 compound heterozygous mutations had thymic hypoplasia, causing a T-B+NK+ SCID phenotype, whereas the hair and nails of these mice were normal. Characterization of the functional changes due to the Foxn1 mutations revealed a 5-amino acid segment at the end of the DNA-binding domain essential for the development of TECs but not keratinocytes. The transcriptional activity of this Foxn1 mutant was partly retained, indicating a region that specifies TEC functions. Analysis of an additional 9 FOXN1 mutations identified in multiple unrelated patients revealed distinct functional consequences contingent on the impact of the mutation on the DNA-binding and transactivation domains of FOXN1.

Indexed as

Forkhead Transcription FactorsHeterozygoteMutationSevere Combined ImmunodeficiencyThymus GlandAnimalsCRISPR-Cas SystemsFemaleHumansMaleMiceMice, NudeProtein DomainsForkhead Transcription FactorsWhn proteinGenetic diseasesGeneticsImmunologyMonogenic diseasesT cell development

Identifiers

PMID31566583
PMCPMC6819092
OpenAlexW2979173000

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.