Evidence map›Paper›PMID 31566424›Full record

ArticleAmerican journal of physiology. Renal physiology2019

Forward genetic screen in human podocytes identifies diphthamide biosynthesis genes as regulators of adhesion.

Davide P Cinà, Troy Ketela, Kevin R Brown, Megha Chandrashekhar, Patricia Mero, Chengjin Li, Tuncer Onay, Yulong Fu, Zhe Han, Moin Saleem and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of physiology. Renal physiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.1field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. ACS omega · 2024
    Article
  4. Article
  5. Article
  6. UsingFrontiers in cell and developmental biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Davide P CinàFeinberg Cardiovascular and Renal Research Institute, Northwestern University Feinberg School of Medicine, Chicago, Illinois.
Troy KetelaDonnelly Centre, Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada.
Kevin R BrownDonnelly Centre, Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada.
Megha ChandrashekharDonnelly Centre, Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada.
Patricia MeroDonnelly Centre, Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada.
Chengjin LiTanenbaum-Lunenfeld Research Institute, University of Toronto, Toronto, Ontario, Canada.
Tuncer OnayFeinberg Cardiovascular and Renal Research Institute, Northwestern University Feinberg School of Medicine, Chicago, Illinois.
Yulong FuCenter for Genetic Medicine Research, Children's National Health System, Washington, District of Columbia.
Zhe HanCenter for Genetic Medicine Research, Children's National Health System, Washington, District of Columbia.
Moin SaleemSchool of Clinical Sciences, Children's Renal Unit and Academic Renal Unit, University of Bristol, Bristol, United Kingdom.
Jason MoffatDonnelly Centre, Banting and Best Department of Medical Research, University of Toronto, Toronto, Ontario, Canada.
Susan E QuagginFeinberg Cardiovascular and Renal Research Institute, Northwestern University Feinberg School of Medicine, Chicago, Illinois.
University of Toronto · CAChildren's National · USRenal Research Institute · USNorthwestern University · USUniversity of Bristol · GB

Funding

Activation of the Angiopoietin-Tie2/TEK Pathway to Treat Ocular Hypertension and GlaucomaR01EY025799 · NEI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JIN, JING, QUAGGIN, SUSAN E. · 2016 to 2024
$5.8M
Therapeutics Development Core (Core B)P30DK114857 · NIDDK · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GEORGE, ALFRED L., QUAGGIN, SUSAN E. · 2018 to 2022
$5.7M
Modeling Nephrotic Syndrome in Drosophila NephrocytesR01DK098410 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI HAN, ZHE · 2014 to 2022
$3.3M
Exploiting Tie2 Activation for the Treatment of Vascular DiseasesR01HL124120 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI QUAGGIN, SUSAN E. · 2014 to 2017
$1.5M
CIHR M0P62931CIHR M0P77756Medical Research Council G0800200Medical Research Council G0800571Medical Research Council MR/L002418/1Medical Research Council MR/P024297/1Medical Research Council MR/R003017/1Medical Research Council MR/R013942/1NEI NIH HHS R01 EY025799NHLBI NIH HHS R01 HL124120NIDDK NIH HHS P30 DK114857NIDDK NIH HHS R01 DK098410
6 · The paper itself

Abstract

Podocyte function is tightly linked to the complex organization of its cytoskeleton and adhesion to the underlying glomerular basement membrane. Adhesion of cultured podocytes to a variety of substrates is reported to correlate with podocyte health. To identify novel genes that are important for podocyte function, we designed an in vitro genetic screen based on podocyte adhesion to plates coated with either fibronectin or soluble Fms-like tyrosine kinase-1 (sFLT1)/Fc. A genome-scale pooled RNA interference screen on immortalized human podocytes identified 77 genes that increased adhesion to fibronectin, 101 genes that increased adhesion to sFLT1/Fc, and 44 genes that increased adhesion to both substrates when knocked down. Multiple shRNAs against diphthamide biosynthesis protein 1-4 (DPH1-DPH4) were top hits for increased adhesion. Immortalized human podocyte cells stably expressing these hairpins displayed increased adhesion to both substrates. We then used CRISPR-Cas9 to generate podocyte knockout cells for

Indexed as

AnimalsCell AdhesionCell LineDrosophilaFibronectinsHigh-Throughput Screening AssaysHistidineHSP40 Heat-Shock ProteinsHumansIntracellular Signaling Peptides and ProteinsKidneyMinor Histocompatibility AntigensPodocytesProteinsRNA, Small InterferingTumor Suppressor ProteinsdiphthamideDNAJC24 protein, humanDPH1 protein, humanDPH2 protein, humanDPH3 protein, humanFibronectinsFLT1 protein, humanHistidineHSP40 Heat-Shock ProteinsIntracellular Signaling Peptides and ProteinsMinor Histocompatibility AntigensProteinsRNA, Small InterferingTumor Suppressor ProteinsVascular Endothelial Growth Factor Receptor-1adhesiondiphthamidegenetic screenglomeruluspodocyte

Identifiers

PMID31566424
PMCPMC6962514
OpenAlexW2977288533

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.