Evidence map›Paper›PMID 31565863›Full record

ArticleJournal of cellular and molecular medicine2019

Identification of key genes and pathways associated with different immune statuses of hepatitis B virus infection.

Jinglan Jin, Hongqin Xu, Ruihong Wu, Na Gao, Na Wu, Shibo Li, Junqi Niu

Open access · goldAbstract read
In one paragraph

Article in Journal of cellular and molecular medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Jinglan JinDepartment of Hepatology, The First Hospital of Jilin University, Jilin University, Changchun, China.
Hongqin XuDepartment of Hepatology, The First Hospital of Jilin University, Jilin University, Changchun, China.
Ruihong WuDepartment of Hepatology, The First Hospital of Jilin University, Jilin University, Changchun, China.
Na GaoDepartment of Infectious Disease, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China.
Na WuLanshan People's Hospital, Linyi, China.
Shibo LiDepartment of Pediatrics, Genetics Laboratory, University of Oklahoma Health Sciences Center (OUHSC), Oklahoma City, OK, USA.
Junqi NiuDepartment of Hepatology, The First Hospital of Jilin University, Jilin University, Changchun, China.ORCID 0000-0002-8083-0295
Jilin University · CNLinyi People's Hospital · CNSun Yat-sen University · CNUniversity of Oklahoma Health Sciences Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We aimed to identify key genes and pathways associated with different immune statuses of hepatitis B virus (HBV) infection. The gene expression and DNA methylation profiles were analysed in different immune statuses of HBV infection. Differentially expressed genes (DEGs) and differentially methylated genes (DMGs) were identified, followed by their functional and integrative analyses. The differential expression of IgG Fc receptors (FcγRs) in chronic HBV-infected patients and immune cells during different stages of HBV infection was investigated. Toll-like receptor (TLR) signalling pathway (including TLR6) and leucocyte transendothelial migration pathway (including integrin subunit beta 1) were enriched during acute infection. Key DEGs, such as FcγR Ib and FcγR Ia, and interferon-alpha inducible protein 27 showed correlation with alanine aminotransferase levels, and they were differentially expressed between acute and immune-tolerant phases and between immune-tolerant and immune-clearance phases. The integrative analysis of DNA methylation profile showed that lowly methylated and highly expressed genes, including cytotoxic T lymphocyte-associated protein 4 and mitogen-activated protein kinase 3 were enriched in T cell receptor signalling pathway during acute infection. Highly methylated and lowly expressed genes, such as Ras association domain family member 1 and cyclin-dependent kinase inhibitor 2A were identified in chronic infection. Furthermore, differentially expressed FcγR Ia, FcγR IIa and FcγR IIb, CD3

Indexed as

DNA MethylationFemaleGene ExpressionHepatitis BHepatitis B, ChronicHepatitis B virusHumansKiller Cells, NaturalMaleReceptors, Antigen, T-CellReceptors, IgGSignal TransductionT-Lymphocytes, CytotoxicReceptors, Antigen, T-CellReceptors, IgGDNA methylation profileGene expression profileIgG Fc receptorsT cell receptor signalling pathwayTLR signalling pathway

Identifiers

PMID31565863
PMCPMC6815815
OpenAlexW2978813132

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.