Evidence map›Paper›PMID 31564765›Full record

ArticleCommunications in statistics: Simulation and computation2019

A study of the properties of Gaussian mixture model for stable isotope standard quantification in MALDI-TOF MS.

John Christian G Spainhour, Michael G Janech, Viswanathan Ramakrishnan

Abstract read
In one paragraph

Article in Communications in statistics: Simulation and computation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

John Christian G SpainhourGeorgia Institute of Technology, Department of Biomedical Engineering, 313 Ferst Drive, Room 2127 Atlanta, GA 30332.
Michael G JanechDivision of Nephrology, Department of Medicine, Medical University of South Carolina, Clinical Science Bldg., 829. 96 Jonathan Lucas St, Charleston, SC 29425. 843-792-1083.
Viswanathan RamakrishnanMedical University of South Carolina, Department of Public Health Sciences, 135 Cannon Street, Rm. 305, Charleston, South Carolina 29425. 843-876-1153.

Funding

Resource CoreP30AR072582 · NIAMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI JAMES C OATES · 2017 to 2026
$8.5M
Patient Resource CoreP60AR062755 · NIAMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI KAMEN, DIANE L · 2012 to 2016
$5.8M
NIAMS NIH HHS P30 AR072582NIAMS NIH HHS P60 AR062755
6 · The paper itself

Abstract

The quantification of peptides in Matrix assisted laser desorption/ionization time-of-flight mass spectrum analysis coupled with stable isotope standards has been used to quantify native peptides under many experimental conditions. This approach has difficulties quantifying samples containing peptides with ion currents in overlapping (convolved) spectra. In a previous article we proposed a reparametrized Gaussian mixture model based on the known characteristics of the peptides that could also accommodate overlapping spectra. We demonstrated the application of our model in a series of single and overlapping peptides quantification experiments. Here, we focus solely on studying the properties of our approach and examine the characteristics of the GMM approach in convolved peptides using simulated spectra and provide a method for simulating these spectra.

Indexed as

Gaussian mixtureMALDI-TOF MSspectra simulation

Identifiers

PMID31564765
PMCPMC6764515

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.