Evidence map›Paper›PMID 31564431›Full record

ArticleAmerican journal of human genetics2019

Adipose Tissue Gene Expression Associations Reveal Hundreds of Candidate Genes for Cardiometabolic Traits.

Chelsea K Raulerson, Arthur Ko, John C Kidd, Kevin W Currin, Sarah M Brotman, Maren E Cannon, Ying Wu, Cassandra N Spracklen, Anne U Jackson, Heather M Stringham and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 2 pooled it
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 2 syntheses or guidelines pooled it, 84 citations in OpenAlex.

  1. Pooled it
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  14. Genetic regulation of fatty acid content in adipose tissue.American journal of human genetics · 2026
    Article
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  19. Review
  20. Higher eQTL power reveals signals that boost GWAS colocalization.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 9 institutions in 3 countries.

Chelsea K RaulersonDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.
Arthur KoDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA 90095, USA; Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA 90095, USA.
John C KiddDepartment of Biostatistics, University of North Carolina, Chapel Hill, NC 27599, USA.
Kevin W CurrinDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.
Sarah M BrotmanDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.
Maren E CannonDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.
Ying WuDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.
Cassandra N SpracklenDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA.
Anne U JacksonDepartment of Biostatistics and Center for Statistical Genetics, School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA.
Heather M StringhamDepartment of Biostatistics and Center for Statistical Genetics, School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA.
Ryan P WelchDepartment of Biostatistics and Center for Statistical Genetics, School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA.
Christian FuchsbergerCenter for Biomedicine, European Academy of Bolzano/Bozen, University of Lübeck, Bolzano/Bozen 39100, Italy.
Adam E LockeMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63110, USA.
Narisu NarisuNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Aldons J LusisDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA 90095, USA.
Mete CivelekDepartment of Biomedical Engineering, University of Virginia, Charlottesville, VA 22908, USA.
Terrence S FureyDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA.
Johanna KuusistoInstitute of Clinical Medicine, Kuopio University Hospital, University of Eastern Finland, Kuopio 70210, Finland.
Francis S CollinsNational Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA.
Michael BoehnkeDepartment of Biostatistics and Center for Statistical Genetics, School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA.
Laura J ScottDepartment of Biostatistics and Center for Statistical Genetics, School of Public Health, University of Michigan, Ann Arbor, MI 48109, USA.
Dan-Yu LinDepartment of Biostatistics, University of North Carolina, Chapel Hill, NC 27599, USA.
Michael I LoveDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Biostatistics, University of North Carolina, Chapel Hill, NC 27599, USA.
Markku LaaksoInstitute of Clinical Medicine, Kuopio University Hospital, University of Eastern Finland, Kuopio 70210, Finland.
Päivi PajukantaDepartment of Human Genetics, David Geffen School of Medicine at UCLA, Los Angeles, CA 90095, USA; Institute for Precision Health, David Geffen School of Medicine at UCLA, Los Angeles, CA 90095, USA.
Karen L MohlkeDepartment of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA. Electronic address: mohlke@med.unc.edu.
University of North Carolina at Chapel Hill · USUniversity of Michigan–Ann Arbor · USUniversity of California, Los Angeles · USNational Institutes of Health · USEurac Research · ITJames S. McDonnell Foundation · USKuopio University Hospital · FIUniversity of Eastern Finland · FIUniversity of Virginia · US

Funding

Systems genomics of metabolic syndrome traitsP01HL028481 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REUE, KAREN · 1985 to 2019
$50.2M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa A. Troester · 2001 to 2026
$36.3M
Regional Pilot And Feasibility Study Grants ProgramP30DK020572 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Mehboob A Hussain · 2013 to 2026
$24.3M
Statistical Methods for Cancer Clinical TrialsP01CA142538 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TSIATIS, ANASTASIOS A · 2010 to 2019
$21.3M
UNC Initiative for Maximizing Student DevelopmentR25GM055336 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COOK, JEANETTE GOWEN, KASH, THOMAS L. · 1996 to 2023
$12.1M
Identifying Genes for Type 2 Diabetes: FUSIONU01DK062370 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BOEHNKE, MICHAEL L, SCOTT, LAURA J. · 2009 to 2021
$11.6M
Targeted Genetic Analysis of T2D and Quantitative TraitsR01DK072193 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAREN L. MOHLKE · 2005 to 2026
$11.3M
Genetic epidemiology of rare and regulatory variants for metabolic traitsR01DK093757 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAREN L. MOHLKE · 2011 to 2026
$8.2M
Identifying Genes for Type 2 Diabetes:FUSIONR01DK062370 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BOEHNKE, MICHAEL L, SCOTT, LAURA J. · 2003 to 2025
$6.7M
GENETIC ANALYSIS OF TYPE II DIABETES IN FINNISH POPULATIONZ01HG000024 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI COLLINS, FRANCIS S. · 1995 to 2008
$6.2M
NRSA IN GENETICST32GM007092 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SEKELSKY, JEFF J. · 1985 to 2019
$5.9M
A Modular Framework for Accurate, Interpretable, and Reproducible Analysis of Long Read RNA-Seq DataR01HG009937 · NHGRI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Michael Isaiah Love, Robert Patro · 2018 to 2026
$2.8M
Intramural NIH HHS Z01 HG000024NCI NIH HHS P01 CA142538NHGRI NIH HHS R01 HG009937NHGRI NIH HHS R01 HG009974NHLBI NIH HHS F31 HL127921NHLBI NIH HHS F31 HL146121NHLBI NIH HHS P01 HL028481NIDDK NIH HHS P30 DK020572NIDDK NIH HHS R01 DK062370NIDDK NIH HHS R01 DK072193NIDDK NIH HHS R01 DK093757NIDDK NIH HHS U01 DK062370NIDDK NIH HHS U01 DK105561NIEHS NIH HHS P30 ES010126NIGMS NIH HHS R25 GM055336NIGMS NIH HHS T32 GM007092NIGMS NIH HHS T32 GM067553NIMH NIH HHS R01 MH118349
6 · The paper itself

Abstract

Genome-wide association studies (GWASs) have identified thousands of genetic loci associated with cardiometabolic traits including type 2 diabetes (T2D), lipid levels, body fat distribution, and adiposity, although most causal genes remain unknown. We used subcutaneous adipose tissue RNA-seq data from 434 Finnish men from the METSIM study to identify 9,687 primary and 2,785 secondary cis-expression quantitative trait loci (eQTL; <1 Mb from TSS, FDR < 1%). Compared to primary eQTL signals, secondary eQTL signals were located further from transcription start sites, had smaller effect sizes, and were less enriched in adipose tissue regulatory elements compared to primary signals. Among 2,843 cardiometabolic GWAS signals, 262 colocalized by LD and conditional analysis with 318 transcripts as primary and conditionally distinct secondary cis-eQTLs, including some across ancestries. Of cardiometabolic traits examined for adipose tissue eQTL colocalizations, waist-hip ratio (WHR) and circulating lipid traits had the highest percentage of colocalized eQTLs (15% and 14%, respectively). Among alleles associated with increased cardiometabolic GWAS risk, approximately half (53%) were associated with decreased gene expression level. Mediation analyses of colocalized genes and cardiometabolic traits within the 434 individuals provided further evidence that gene expression influences variant-trait associations. These results identify hundreds of candidate genes that may act in adipose tissue to influence cardiometabolic traits.

Indexed as

Gene ExpressionAdipose TissueAllelesBody Mass IndexDiabetes Mellitus, Type 2FinlandGenome-Wide Association StudyHumansMaleObesityQuantitative Trait LociWaist-Hip RatioadipocytecolocalizationdiabeteseQTLGWASlipidobesitysecondary signaltrans-ancestrywaist-hip ratio

Identifiers

PMID31564431
PMCPMC6817527
OpenAlexW2975621369

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.